Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq926 113 5e-23 seq137 113 5e-23 >seq926 Length=180086 Score = 113 bits (124), Expect = 5e-23 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | | ||||| | ||| Sbjct 24919 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACAATTCTATTTCGCCGAG 24978 Query 85 CTCACGGT-TGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 || | | |||||||| ||| || ||||||| |||||||||||||||| Sbjct 24979 -TCTCTCTCTGAGACAGTACCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 25037 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 25038 ACAAGGAATTTCGCTACCTTAGGACCGTTA 25067 >seq137 Length=19730 Score = 113 bits (124), Expect = 5e-23 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | | ||||| | ||| Sbjct 9681 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACAATTCTATTTCGCCGAG 9622 Query 85 CTCACGGT-TGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 || | | |||||||| ||| || ||||||| |||||||||||||||| Sbjct 9621 -TCTCTCTCTGAGACAGTACCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 9563 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 9562 ACAAGGAATTTCGCTACCTTAGGACCGTTA 9533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547195091274