Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq926 251 2e-64 seq137 251 2e-64 >seq926 Length=180086 Score = 251 bits (278), Expect = 2e-64 Identities = 257/330 (78%), Gaps = 14/330 (4%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| || || | ||||| | | ||||||| |||| || ||||||||||||||| Sbjct 28330 TTTACAACCCACAGGCATTCTTCC-CTCACGCGGTATTG-CTCCGTCAGGCTTTCGCCCA 28387 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || ||||||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct 28388 TTGCGGAAAATTCCCCACTGCTGCCTTCCGTAGAAGTCTGGACCGTGTCTCAGTTCCAGT 28447 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||||||||||||||| ||||| ||| ||||||||||||||| ||| ||| | || Sbjct 28448 GTGGCTGATCATCCTCTCAAACCAGCTACTGATCGTCGCCTTGGTAAGCTTTTAATTTAC 28507 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 ||||||||||||| | | || |||||||| ||||| | | | ||| ||| Sbjct 28508 CAACTAGCTAATCAGGCATAAGCTCATCT-------TAAGGC---AGATTTCTCTG-TTT 28556 Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301 | | | | | | |||| || |||||| ||||||| | ||||| |||| | | ||| Sbjct 28557 CACTCTGAAG-CATATGGGGCATTAGCAATCGTTTCCAATTGTTATTCCCCTCCTCAAGG 28615 Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGC 331 ||||||| || | ||||||||||||||||| Sbjct 28616 CAGATTCTTATGTATTACTCACCCGTCCGC 28645 >seq137 Length=19730 Score = 251 bits (278), Expect = 2e-64 Identities = 257/330 (78%), Gaps = 14/330 (4%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| || || | ||||| | | ||||||| |||| || ||||||||||||||| Sbjct 6270 TTTACAACCCACAGGCATTCTTCC-CTCACGCGGTATTG-CTCCGTCAGGCTTTCGCCCA 6213 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || ||||||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct 6212 TTGCGGAAAATTCCCCACTGCTGCCTTCCGTAGAAGTCTGGACCGTGTCTCAGTTCCAGT 6153 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||||||||||||||| ||||| ||| ||||||||||||||| ||| ||| | || Sbjct 6152 GTGGCTGATCATCCTCTCAAACCAGCTACTGATCGTCGCCTTGGTAAGCTTTTAATTTAC 6093 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 ||||||||||||| | | || |||||||| ||||| | | | ||| ||| Sbjct 6092 CAACTAGCTAATCAGGCATAAGCTCATCT-------TAAGGC---AGATTTCTCTG-TTT 6044 Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301 | | | | | | |||| || |||||| ||||||| | ||||| |||| | | ||| Sbjct 6043 CACTCTGAAG-CATATGGGGCATTAGCAATCGTTTCCAATTGTTATTCCCCTCCTCAAGG 5985 Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGC 331 ||||||| || | ||||||||||||||||| Sbjct 5984 CAGATTCTTATGTATTACTCACCCGTCCGC 5955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071990073280