Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq926 269 1e-69 seq137 269 1e-69 >seq926 Length=180086 Score = 269 bits (298), Expect = 1e-69 Identities = 348/470 (74%), Gaps = 24/470 (5%) Strand=Plus/Plus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| || ||| |||||||||||||||||||||| | | || ||||||| ||||| Sbjct 26100 CGCTGCGCCAAAACGCATTTCGGGGAGAACCAGCTAGCTCCGGATTCGATTGGCATTTCA 26159 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 |||||| |||||| || ||| || | |||||||| | ||| ||||||| ||||||| | Sbjct 26160 CCCCTAGCCACAGCTCGTCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAG 26219 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCT-TGATC-GT 313 | ||||| |||||| |||| |||||| ||||||| | ||||||||| | | | || Sbjct 26220 TGTTACCTAAGCTTCACCCTGGCCATGGCTAGATCATCCGGGTTCGGGTCTATAAACAGT 26279 Query 314 GCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACAC---GGGTTAA 370 | ||| ||||||||||| | ||||||||| ||| |||| | | |||| Sbjct 26280 G--ACT--TACGCCCTATTAAGGCTCGCTTTCACTATGGCTTTAATATTCTCTATCTTAA 26335 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 ||| | ||| | | || |||| |||||||||||||| | ||||| |||| Sbjct 26336 CCT---GCCACTGCCTATAAGTCGCCGGCTCATTCTTCAACATGCACGAAGTCA------ 26386 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 | | | || | || || | || | ||||| || | ||||||| || ||||||||| Sbjct 26387 AACGATTAG--TCGTC--CTTCTACTGCTTGTAAGCTTACGGTTTCATGTTCTATTTCAC 26442 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 ||||| | ||||| |||||||||||||||||||||||| ||| | |||||||||| | Sbjct 26443 TCCCCTTCCGGGGTTCTTTTCACCTTTCCCTCACGGTAC-TGTTCACTATCGGTCATTTA 26501 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||| ||||||| |||| |||||||| |||||||||||| ||||||| Sbjct 26502 GGAATATTTAGCCTTACGAGGTGGTCCTCGCAGATTCACACGGAATTTCA 26551 >seq137 Length=19730 Score = 269 bits (298), Expect = 1e-69 Identities = 348/470 (74%), Gaps = 24/470 (5%) Strand=Plus/Minus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| || ||| |||||||||||||||||||||| | | || ||||||| ||||| Sbjct 8500 CGCTGCGCCAAAACGCATTTCGGGGAGAACCAGCTAGCTCCGGATTCGATTGGCATTTCA 8441 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 |||||| |||||| || ||| || | |||||||| | ||| ||||||| ||||||| | Sbjct 8440 CCCCTAGCCACAGCTCGTCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAG 8381 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCT-TGATC-GT 313 | ||||| |||||| |||| |||||| ||||||| | ||||||||| | | | || Sbjct 8380 TGTTACCTAAGCTTCACCCTGGCCATGGCTAGATCATCCGGGTTCGGGTCTATAAACAGT 8321 Query 314 GCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACAC---GGGTTAA 370 | ||| ||||||||||| | ||||||||| ||| |||| | | |||| Sbjct 8320 G--ACT--TACGCCCTATTAAGGCTCGCTTTCACTATGGCTTTAATATTCTCTATCTTAA 8265 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 ||| | ||| | | || |||| |||||||||||||| | ||||| |||| Sbjct 8264 CCT---GCCACTGCCTATAAGTCGCCGGCTCATTCTTCAACATGCACGAAGTCA------ 8214 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 | | | || | || || | || | ||||| || | ||||||| || ||||||||| Sbjct 8213 AACGATTAG--TCGTC--CTTCTACTGCTTGTAAGCTTACGGTTTCATGTTCTATTTCAC 8158 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 ||||| | ||||| |||||||||||||||||||||||| ||| | |||||||||| | Sbjct 8157 TCCCCTTCCGGGGTTCTTTTCACCTTTCCCTCACGGTAC-TGTTCACTATCGGTCATTTA 8099 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||| ||||||| |||| |||||||| |||||||||||| ||||||| Sbjct 8098 GGAATATTTAGCCTTACGAGGTGGTCCTCGCAGATTCACACGGAATTTCA 8049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817583169024