Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq926 266 8e-69 seq137 266 8e-69 >seq926 Length=180086 Score = 266 bits (294), Expect = 8e-69 Identities = 324/420 (77%), Gaps = 25/420 (6%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| || | ||||| | ||||||||| ||||||||||| |||||| ||||| ||| Sbjct 26167 CCACAGCTCGT-CCGCTGA-TTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT-GTT 26223 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| || ||| || |||| |||| || |||||| |||| || ||||||||| | || Sbjct 26224 ACCTAAGCTT-CACCCTGGCCAT-GGCTAGATCATCCGGGTT-CGGGTCTATAAAC-AGT 26279 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTT-- 186 |||| |||||||| |||| |||||||| | ||| | || ||||| | | ||| Sbjct 26280 GACTT-ACGCCCTATTAAGGCTCGCTTT-CACTATGGCTTTAATATTCTCT--ATCTTAA 26335 Query 187 --TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA- 243 |||||||| ||||||||| | | |||| | ||| | | ||| ||||| ||| | Sbjct 26336 CCTGCCACTGCCTATAAGTCGCCGGCTCATTCTTCAACATGCACGAAGTCA---AACGAT 26392 Query 244 -AGTGGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCC 301 ||| | | | | |||||||||| || |||||||||| | |||||||||||||||| ||| Sbjct 26393 TAGTCGTCCTTCTACTGCTTGTAAGCTTACGGTTTCATGTTCTATTTCACTCCCCT-TCC 26451 Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 |||||||||||| |||||||||||||||||| ||||||||||||||| | || | ||||| Sbjct 26452 GGGGTTCTTTTCACCTTTCCCTCACGGTACT-GTTCACTATCGGTCATTTAGGAATATTT 26510 Query 362 AGCCTT-GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||| |||| |||||| | || ||||| || | |||| |||| ||| | ||||||| Sbjct 26511 AGCCTTACGAGG-TGGTCCTCGCAGATTCACACGGAATTTCACGTGTTCCATGCTACTCG 26569 >seq137 Length=19730 Score = 266 bits (294), Expect = 8e-69 Identities = 324/420 (77%), Gaps = 25/420 (6%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| || | ||||| | ||||||||| ||||||||||| |||||| ||||| ||| Sbjct 8433 CCACAGCTCGT-CCGCTGA-TTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT-GTT 8377 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| || ||| || |||| |||| || |||||| |||| || ||||||||| | || Sbjct 8376 ACCTAAGCTT-CACCCTGGCCAT-GGCTAGATCATCCGGGTT-CGGGTCTATAAAC-AGT 8321 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTT-- 186 |||| |||||||| |||| |||||||| | ||| | || ||||| | | ||| Sbjct 8320 GACTT-ACGCCCTATTAAGGCTCGCTTT-CACTATGGCTTTAATATTCTCT--ATCTTAA 8265 Query 187 --TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA- 243 |||||||| ||||||||| | | |||| | ||| | | ||| ||||| ||| | Sbjct 8264 CCTGCCACTGCCTATAAGTCGCCGGCTCATTCTTCAACATGCACGAAGTCA---AACGAT 8208 Query 244 -AGTGGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCC 301 ||| | | | | |||||||||| || |||||||||| | |||||||||||||||| ||| Sbjct 8207 TAGTCGTCCTTCTACTGCTTGTAAGCTTACGGTTTCATGTTCTATTTCACTCCCCT-TCC 8149 Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 |||||||||||| |||||||||||||||||| ||||||||||||||| | || | ||||| Sbjct 8148 GGGGTTCTTTTCACCTTTCCCTCACGGTACT-GTTCACTATCGGTCATTTAGGAATATTT 8090 Query 362 AGCCTT-GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||| |||| |||||| | || ||||| || | |||| |||| ||| | ||||||| Sbjct 8089 AGCCTTACGAGG-TGGTCCTCGCAGATTCACACGGAATTTCACGTGTTCCATGCTACTCG 8031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241588502784