Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq926 188 1e-45 seq137 188 1e-45 >seq926 Length=180086 Score = 188 bits (208), Expect = 1e-45 Identities = 224/302 (74%), Gaps = 19/302 (6%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||||| |||| ||||||| | || || |||||||||||||| |||||| ||||| Sbjct 28367 GCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTTCCGTAGAAGTCT 28426 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 || |||||||||||| ||| |||||| | ||| ||||||| || ||||| |||||||| Sbjct 28427 GGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAAACCAGCTACTGATCGTCGC 28486 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATA 186 |||||| ||| ||| | |||||||| |||||| | | ||| |||| || || | | Sbjct 28487 CTTGGTAAGCTTTTAATTTACCAACTAGCTAATCAGGCATAAGCTCATC-TTAAGGCAGA 28545 Query 187 AATCTTTGGTCAAAGAATGATGCCATCCTCTGA--CATTATGCGGTATTAGCGTTCGTTT 244 ||| || | | |||||| || |||| || |||||| |||||| Sbjct 28546 TTTCTCTGTTTCA--------------CTCTGAAGCA-TATGGGGCATTAGCAATCGTTT 28590 Query 245 CCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 |||| |||||||| ||| ||||||| || || | || |||||||||||||||| ||| Sbjct 28591 CCAATTGTTATTCCCCTCCTCAAGGCAGATT-CTTATGTATTACTCACCCGTCCGCTACT 28649 Query 305 AA 306 || Sbjct 28650 AA 28651 >seq137 Length=19730 Score = 188 bits (208), Expect = 1e-45 Identities = 224/302 (74%), Gaps = 19/302 (6%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||||| |||| ||||||| | || || |||||||||||||| |||||| ||||| Sbjct 6233 GCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTTCCGTAGAAGTCT 6174 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 || |||||||||||| ||| |||||| | ||| ||||||| || ||||| |||||||| Sbjct 6173 GGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAAACCAGCTACTGATCGTCGC 6114 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATA 186 |||||| ||| ||| | |||||||| |||||| | | ||| |||| || || | | Sbjct 6113 CTTGGTAAGCTTTTAATTTACCAACTAGCTAATCAGGCATAAGCTCATC-TTAAGGCAGA 6055 Query 187 AATCTTTGGTCAAAGAATGATGCCATCCTCTGA--CATTATGCGGTATTAGCGTTCGTTT 244 ||| || | | |||||| || |||| || |||||| |||||| Sbjct 6054 TTTCTCTGTTTCA--------------CTCTGAAGCA-TATGGGGCATTAGCAATCGTTT 6010 Query 245 CCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 |||| |||||||| ||| ||||||| || || | || |||||||||||||||| ||| Sbjct 6009 CCAATTGTTATTCCCCTCCTCAAGGCAGATT-CTTATGTATTACTCACCCGTCCGCTACT 5951 Query 305 AA 306 || Sbjct 5950 AA 5949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998390754816