Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq926 248 2e-63 seq137 248 2e-63 >seq926 Length=180086 Score = 248 bits (274), Expect = 2e-63 Identities = 301/400 (75%), Gaps = 10/400 (3%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||| | || |||||||||||||||| ||||||||| | ||| ||| | | Sbjct 25573 CGACTACGCTTTTCAGCCTCGCCTTAGGACCTGACTCACCCTTCGTGGACGAACCTTGCA 25632 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | ||||||||| ||| Sbjct 25633 AAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGCTACTCAAGCCG 25692 Query 120 GCATTCTCACTC--GCATCAACTCCACCACACAGTCACCCGGCAGCTTCAC-CACTGACA 176 |||||||||| || | | ||||| || | | || | |||||| | | ||| Sbjct 25693 ACATTCTCACTTCTGCTT--AGTCCAC-ACCCGCTTACGCTAGTGCTTCAATCTATAACA 25749 Query 177 CGACGCTCCCCTACCCAACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCG 236 ||||||||||||| | | | | | ||||||||||||| || |||| |||||| Sbjct 25750 GAACGCTCCCCTACCGATGTA-ATAACATCCCACAGCTTCGGCAAATTGCTTA-GCCCCG 25807 Query 237 CTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGG 296 | |||| ||||||| |||||| | |||||||||||||||||||||||||| |||||| | Sbjct 25808 TT-CATTTTCGGCGCAGAATCATTAGACCAGTGAGCTATTACGCACTCTTTAAAGGATTG 25866 Query 297 CTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCA 356 ||||||| |||| ||||||||||||||||| || ||||| |||||| |||| || | Sbjct 25867 CTGCTTCTAAGCAAACCTCCTGGTTGTCTAAACATTTCCACTTCCTTTATCACTTAGCAA 25926 Query 357 CCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 | |||||||||||||||| || |||||||||||||||| Sbjct 25927 TTATTTAGGGGCCTTAGCTGGTGGTCTGGGCTGTTTCCCT 25966 >seq137 Length=19730 Score = 248 bits (274), Expect = 2e-63 Identities = 301/400 (75%), Gaps = 10/400 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||| | || |||||||||||||||| ||||||||| | ||| ||| | | Sbjct 9027 CGACTACGCTTTTCAGCCTCGCCTTAGGACCTGACTCACCCTTCGTGGACGAACCTTGCA 8968 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | ||||||||| ||| Sbjct 8967 AAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGCTACTCAAGCCG 8908 Query 120 GCATTCTCACTC--GCATCAACTCCACCACACAGTCACCCGGCAGCTTCAC-CACTGACA 176 |||||||||| || | | ||||| || | | || | |||||| | | ||| Sbjct 8907 ACATTCTCACTTCTGCTT--AGTCCAC-ACCCGCTTACGCTAGTGCTTCAATCTATAACA 8851 Query 177 CGACGCTCCCCTACCCAACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCG 236 ||||||||||||| | | | | | ||||||||||||| || |||| |||||| Sbjct 8850 GAACGCTCCCCTACCGATGTA-ATAACATCCCACAGCTTCGGCAAATTGCTTA-GCCCCG 8793 Query 237 CTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGG 296 | |||| ||||||| |||||| | |||||||||||||||||||||||||| |||||| | Sbjct 8792 TT-CATTTTCGGCGCAGAATCATTAGACCAGTGAGCTATTACGCACTCTTTAAAGGATTG 8734 Query 297 CTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCA 356 ||||||| |||| ||||||||||||||||| || ||||| |||||| |||| || | Sbjct 8733 CTGCTTCTAAGCAAACCTCCTGGTTGTCTAAACATTTCCACTTCCTTTATCACTTAGCAA 8674 Query 357 CCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 | |||||||||||||||| || |||||||||||||||| Sbjct 8673 TTATTTAGGGGCCTTAGCTGGTGGTCTGGGCTGTTTCCCT 8634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177589095424