Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq926 104 2e-20 seq137 104 2e-20 >seq926 Length=180086 Score = 104 bits (114), Expect = 2e-20 Identities = 121/161 (75%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||| ||| |||||||||| ||| | | | | ||| || |||||||| | || | Sbjct 27462 CGAGTTTCAGCCTACAATCCGAACTGAGGCTGCG-TTTATGAGATTAGCTTATCTTCACA 27520 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | || ||| | || ||| ||||||||| ||||||| ||||| | |||||| || Sbjct 27521 GATTTGCGACTCTTTGTCACAACCATTGTAGCACGTGTGTAGCCCAGAGCTTAAGGGGCA 27580 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| |||||||||||| ||||||| Sbjct 27581 TGCTGACTTGACGTCATCCTTACCTTCCTCCGGCTTGTCAC 27621 >seq137 Length=19730 Score = 104 bits (114), Expect = 2e-20 Identities = 121/161 (75%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||| ||| |||||||||| ||| | | | | ||| || |||||||| | || | Sbjct 7138 CGAGTTTCAGCCTACAATCCGAACTGAGGCTGCG-TTTATGAGATTAGCTTATCTTCACA 7080 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | || ||| | || ||| ||||||||| ||||||| ||||| | |||||| || Sbjct 7079 GATTTGCGACTCTTTGTCACAACCATTGTAGCACGTGTGTAGCCCAGAGCTTAAGGGGCA 7020 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| |||||||||||| ||||||| Sbjct 7019 TGCTGACTTGACGTCATCCTTACCTTCCTCCGGCTTGTCAC 6979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415996268220