Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq926 190 3e-46 seq137 190 3e-46 >seq926 Length=180086 Score = 190 bits (210), Expect = 3e-46 Identities = 213/285 (75%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| || || |||||| | | | || || ||| ||||| ||||||||| || Sbjct 28015 GCTTTCGTCTCTGAGTGTCAGTAATAGCCTAGTAAAGCGCTTTCGCTGCTGGTGTTCTTC 28074 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | ||||||||||||||||||||||||| |||||||| || || | | |||| || Sbjct 28075 CCAATATCTACGCATTTCACCGCTACACTGGGAATTCCCTTTACCCATACCATACTCTAG 28134 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 | |||||| | ||| ||| |||||||||| | ||| ||| | ||||| | Sbjct 28135 TCTAGTAGTTTCCATTGCTTGCTTAAGGTTGAGCCCCAATATTTAACAACAGACTTACTA 28194 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||| | | |||||||||| ||||| || ||||||| Sbjct 28195 AACCACCTACAGACGCTTTACGCCCAGTGATTCCGGATAACACTTGCATCCCCCGTATTA 28254 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||||||||||| ||||||||| |||||||| ||||||| Sbjct 28255 CCGCGGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATCAGGTA 28299 >seq137 Length=19730 Score = 190 bits (210), Expect = 3e-46 Identities = 213/285 (75%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| || || |||||| | | | || || ||| ||||| ||||||||| || Sbjct 6585 GCTTTCGTCTCTGAGTGTCAGTAATAGCCTAGTAAAGCGCTTTCGCTGCTGGTGTTCTTC 6526 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | ||||||||||||||||||||||||| |||||||| || || | | |||| || Sbjct 6525 CCAATATCTACGCATTTCACCGCTACACTGGGAATTCCCTTTACCCATACCATACTCTAG 6466 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 | |||||| | ||| ||| |||||||||| | ||| ||| | ||||| | Sbjct 6465 TCTAGTAGTTTCCATTGCTTGCTTAAGGTTGAGCCCCAATATTTAACAACAGACTTACTA 6406 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||| | | |||||||||| ||||| || ||||||| Sbjct 6405 AACCACCTACAGACGCTTTACGCCCAGTGATTCCGGATAACACTTGCATCCCCCGTATTA 6346 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||||||||||| ||||||||| |||||||| ||||||| Sbjct 6345 CCGCGGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATCAGGTA 6301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828792565146