Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq926 78.8 7e-13 seq137 78.8 7e-13 >seq926 Length=180086 Score = 78.8 bits (86), Expect = 7e-13 Identities = 102/139 (73%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| | | ||||| ||| | |||||||||| | || Sbjct 24543 TAACTTTTATCCGTTGAGCGACAGTCTTTCCACTCAGTACTGTCGGATCACTAAGGCCGA 24602 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-- 118 |||||| ||||||| | |||| | ||| ||| |||||| ||| |||| || ||| Sbjct 24603 CTTTCGTCTCTGCTCGACTTGTAGGTCTTGCAGTCAAGCTTCCTTATGCCTTTATACTCG 24662 Query 119 ATCACTACGATTTCCGACC 137 | ||| ||||||||||| Sbjct 24663 AAGACT--GATTTCCGACC 24679 >seq137 Length=19730 Score = 78.8 bits (86), Expect = 7e-13 Identities = 102/139 (73%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| | | ||||| ||| | |||||||||| | || Sbjct 10057 TAACTTTTATCCGTTGAGCGACAGTCTTTCCACTCAGTACTGTCGGATCACTAAGGCCGA 9998 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-- 118 |||||| ||||||| | |||| | ||| ||| |||||| ||| |||| || ||| Sbjct 9997 CTTTCGTCTCTGCTCGACTTGTAGGTCTTGCAGTCAAGCTTCCTTATGCCTTTATACTCG 9938 Query 119 ATCACTACGATTTCCGACC 137 | ||| ||||||||||| Sbjct 9937 AAGACT--GATTTCCGACC 9921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351996944200