Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq758 149 6e-34 seq271 105 7e-21 >seq758 Length=101539 Score = 149 bits (164), Expect = 6e-34 Identities = 142/177 (80%), Gaps = 5/177 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTG-CTCGAATACATTACCATGG 71 |||||| |||||||||||||| ||||||||||||| |||| | |||||||||| ||||| Sbjct 7152 TTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGGCGTTTGCCATGAATACATTAGCATGG 7093 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCT-AGGACCGCCCGTAATGAT 130 |||||||||||||||| || | || |||||| ||||| | |||| || |||||||| Sbjct 7092 AATAATAGAATAGGACCTG-TTTCCTGTTTTGTTGGTTTGTGAGGATCG--GGTAATGAT 7036 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 || | ||| || ||||| | |||||| |||| |||||||||||||||||| Sbjct 7035 TAAGAGGGACGGTTGGGGGCATTTGTATTCCGGCGTCAGAGGTGAAATTCTTGGATT 6979 >seq271 Length=8214 Score = 105 bits (116), Expect = 7e-21 Identities = 133/178 (75%), Gaps = 6/178 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||| | |||||| ||||||| | || ||||| | ||| Sbjct 6566 TTTACTTTGAAAAAATTAGTGTGTTCAAGGCAGGCCGGTTACGCCTGAATAACGTTGCAT 6507 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGTAATG 128 |||||||| ||||||||| | |||||||||||||| || || | ||| | |||||| Sbjct 6506 GGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGCTT-TCGGAAGTCGAGGTAATG 6449 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 || || | ||| | |||||| | ||||| || | ||||||||||||||||| Sbjct 6448 ATTAAGAGGGACGGACGGGGGCATTCGTATTGCGGCGTTAGAGGTGAAATTCTTGGAT 6391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511995407040