Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq926 295 1e-77 seq137 295 1e-77 >seq926 Length=180086 Score = 295 bits (326), Expect = 1e-77 Identities = 231/275 (84%), Gaps = 1/275 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| |||||| ||||||||| |||||| ||||| | |||| |||||||| ||||| Sbjct 24207 GAGGTTGGCTTCCTACTTAGATGCTTTCAGCAGTTATCACATCCACACTTAGCTACCCAG 24266 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | | |||||| | ||||||| |||||||||| |||| |||||||||||||||| Sbjct 24267 CGTTTACTGTTGGCACAATAACTGGTACACCAGAGGTGTGTCTCTCCCGGTCCTCTCGTA 24326 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||||||| |||||||||||| || ||||| | |||||| ||||||||||||||| Sbjct 24327 CTAAGGAGAGCTCCTCTCAATACTCTAACGCCTGCACCGGATATGGACCGAACTGTCTCA 24386 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| Sbjct 24387 CGACGTTCTGAACCCAGCTCGCGTACCGCTTTCATGGGCGAACAGCCCAACCCTTGGGAC 24446 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| | ||||||||||| || |||||||||||| Sbjct 24447 GTACTACCGCCCCAGGATGCGATGAGCCGACATCG 24481 >seq137 Length=19730 Score = 295 bits (326), Expect = 1e-77 Identities = 231/275 (84%), Gaps = 1/275 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| |||||| ||||||||| |||||| ||||| | |||| |||||||| ||||| Sbjct 10393 GAGGTTGGCTTCCTACTTAGATGCTTTCAGCAGTTATCACATCCACACTTAGCTACCCAG 10334 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | | |||||| | ||||||| |||||||||| |||| |||||||||||||||| Sbjct 10333 CGTTTACTGTTGGCACAATAACTGGTACACCAGAGGTGTGTCTCTCCCGGTCCTCTCGTA 10274 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||||||| |||||||||||| || ||||| | |||||| ||||||||||||||| Sbjct 10273 CTAAGGAGAGCTCCTCTCAATACTCTAACGCCTGCACCGGATATGGACCGAACTGTCTCA 10214 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| Sbjct 10213 CGACGTTCTGAACCCAGCTCGCGTACCGCTTTCATGGGCGAACAGCCCAACCCTTGGGAC 10154 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| | ||||||||||| || |||||||||||| Sbjct 10153 GTACTACCGCCCCAGGATGCGATGAGCCGACATCG 10119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780792995736