Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq926 246 7e-63 seq137 246 7e-63 >seq926 Length=180086 Score = 246 bits (272), Expect = 7e-63 Identities = 303/412 (74%), Gaps = 34/412 (8%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 |||||||||| |||| |||||| ||||||| || ||| | |||||||| |||||||| Sbjct 28330 TTTACAACCCACAGGCATTCTTCCCTCACGCGGTATTGCTCCGTCAGGCTTTCGCCCATT 28389 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || ||||||||||||||||| |||||| |||||||||||||||||||||||||||| Sbjct 28390 GCGGAAAATTCCCCACTGCTGCCTTCCGTAGAAGTCTGGACCGTGTCTCAGTTCCAGTGT 28449 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| ||||||||||| |||||||| ||||||||||| ||| || ||| ||| Sbjct 28450 GGCTGATCATCCTCTCAAACCAGCTACTGATCGTCGCCTTGGTAAGCTTTTAATTTACCA 28509 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTT-G 243 ||||||||||| | | ||||| | |||| || | | || ||| Sbjct 28510 ACTAGCTAATCAGGCATAAGCTCATCTTA-------AGGC----AGATTTCTCTGTTTCA 28558 Query 244 GTCTTGCGACG-TTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGG 302 ||| || | |||| || |||||| | |||||||| | ||||| ||||||| ||| Sbjct 28559 CTCT---GAAGCATATGGGGCATTAGCAATCGTTTCCAATTGTTATTCCCCTCCTCAAGG 28615 Query 303 CAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCC 362 ||| ||| | ||||||||||||||||| ||| ||||| || ||| Sbjct 28616 CAGATTCTTATGTATTACTCACCCGTCCGCTACT-------AAAGCATTAA----CTT-- 28662 Query 363 TGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||| ||||||||||||||||| | ||||||||||||| ||||| Sbjct 28663 -----TCGTTCAACTTGCATGTGTTAGGCATACCGCCAGCGTTCATCCTGAG 28709 >seq137 Length=19730 Score = 246 bits (272), Expect = 7e-63 Identities = 303/412 (74%), Gaps = 34/412 (8%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 |||||||||| |||| |||||| ||||||| || ||| | |||||||| |||||||| Sbjct 6270 TTTACAACCCACAGGCATTCTTCCCTCACGCGGTATTGCTCCGTCAGGCTTTCGCCCATT 6211 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || ||||||||||||||||| |||||| |||||||||||||||||||||||||||| Sbjct 6210 GCGGAAAATTCCCCACTGCTGCCTTCCGTAGAAGTCTGGACCGTGTCTCAGTTCCAGTGT 6151 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| ||||||||||| |||||||| ||||||||||| ||| || ||| ||| Sbjct 6150 GGCTGATCATCCTCTCAAACCAGCTACTGATCGTCGCCTTGGTAAGCTTTTAATTTACCA 6091 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTT-G 243 ||||||||||| | | ||||| | |||| || | | || ||| Sbjct 6090 ACTAGCTAATCAGGCATAAGCTCATCTTA-------AGGC----AGATTTCTCTGTTTCA 6042 Query 244 GTCTTGCGACG-TTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGG 302 ||| || | |||| || |||||| | |||||||| | ||||| ||||||| ||| Sbjct 6041 CTCT---GAAGCATATGGGGCATTAGCAATCGTTTCCAATTGTTATTCCCCTCCTCAAGG 5985 Query 303 CAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCC 362 ||| ||| | ||||||||||||||||| ||| ||||| || ||| Sbjct 5984 CAGATTCTTATGTATTACTCACCCGTCCGCTACT-------AAAGCATTAA----CTT-- 5938 Query 363 TGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||| ||||||||||||||||| | ||||||||||||| ||||| Sbjct 5937 -----TCGTTCAACTTGCATGTGTTAGGCATACCGCCAGCGTTCATCCTGAG 5891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222388680576