Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq926 347 4e-93 seq137 347 4e-93 >seq926 Length=180086 Score = 347 bits (384), Expect = 4e-93 Identities = 281/338 (83%), Gaps = 3/338 (1%) Strand=Plus/Minus Query 165 CTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAG 224 ||||||||||||||||||| ||| ||||||||||||||||||||||||| | |||| Sbjct 28522 CTGATTAGCTAGTTGGTAAATTAAAAGCTTACCAAGGCGACGATCAGTAGCTGGTTTGAG 28463 Query 225 AGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTG 284 ||| ||||| |||||| |||||||||||||||||||| ||| |||||| ||||||||||| Sbjct 28462 AGGATGATCAGCCACACTGGAACTGAGACACGGTCCAGACTTCTACGGAAGGCAGCAGTG 28403 Query 285 GGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC 344 |||||| || | |||||||| ||||||||| | ||||| ||||||||| || ||| ||| Sbjct 28402 GGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATACCGCGTGAGGGAAGAATGCC 28343 Query 345 TTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGGAAGCC 402 | |||| ||||| |||| | ||| | |||| | |||||||||| ||| || |||| Sbjct 28342 TGTGGGTTGTAAACCTCTTTTATCAGGAAAGAAGTTATGACGGTACCTGATGAATAAGCA 28283 Query 403 CCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT 462 ||||||||| |||||||||||||||||||||||| || || || |||||||||||| Sbjct 28282 TCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGGGGATGCAAGTGTTATCCGGAATC 28223 Query 463 ACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||| |||||||||| || ||||||||||| |||||| Sbjct 28222 ACT-GGGCGTAAAGCGTCTGTAGGTGGTTTAGTAAGTC 28186 >seq137 Length=19730 Score = 347 bits (384), Expect = 4e-93 Identities = 281/338 (83%), Gaps = 3/338 (1%) Strand=Plus/Plus Query 165 CTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAG 224 ||||||||||||||||||| ||| ||||||||||||||||||||||||| | |||| Sbjct 6078 CTGATTAGCTAGTTGGTAAATTAAAAGCTTACCAAGGCGACGATCAGTAGCTGGTTTGAG 6137 Query 225 AGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTG 284 ||| ||||| |||||| |||||||||||||||||||| ||| |||||| ||||||||||| Sbjct 6138 AGGATGATCAGCCACACTGGAACTGAGACACGGTCCAGACTTCTACGGAAGGCAGCAGTG 6197 Query 285 GGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC 344 |||||| || | |||||||| ||||||||| | ||||| ||||||||| || ||| ||| Sbjct 6198 GGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATACCGCGTGAGGGAAGAATGCC 6257 Query 345 TTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGGAAGCC 402 | |||| ||||| |||| | ||| | |||| | |||||||||| ||| || |||| Sbjct 6258 TGTGGGTTGTAAACCTCTTTTATCAGGAAAGAAGTTATGACGGTACCTGATGAATAAGCA 6317 Query 403 CCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT 462 ||||||||| |||||||||||||||||||||||| || || || |||||||||||| Sbjct 6318 TCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGGGGATGCAAGTGTTATCCGGAATC 6377 Query 463 ACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||| |||||||||| || ||||||||||| |||||| Sbjct 6378 ACT-GGGCGTAAAGCGTCTGTAGGTGGTTTAGTAAGTC 6414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497586132224