Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq926 280 4e-73 seq137 280 4e-73 >seq926 Length=180086 Score = 280 bits (310), Expect = 4e-73 Identities = 309/409 (76%), Gaps = 2/409 (0%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||| ||| || |||| ||||||||| |||||||||||||||||||||||| || || Sbjct 28299 TACCTGATGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGGGGATGC 28240 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 || |||||||||||| ||||||||||||| || ||||||||||| |||||| | || Sbjct 28239 AAGTGTTATCCGGAATCACTGGGCGTAAAGCGTCTGTAGGTGGTTTAGTAAGTCTGTTGT 28180 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 ||| | ||||||||| | || | |||||| | | ||||||| | | | Sbjct 28179 TAAATATTGGGGCTCAACCTTAAGCAAGCAATGGAAACTACTAGACTAGAGTATGGTATG 28120 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 || || |||||||| ||||||||||||||||||||||||||| ||| ||||||||| | Sbjct 28119 GGTAAAGGGAATTCCCAGTGTAGCGGTGAAATGCGTAGATATTGGGAAGAACACCAGCAG 28060 Query 241 CGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAG 300 |||| ||| || || | || | ||||||||| || ||||||| ||| ||| || | Sbjct 28059 CGAAAGCGCTTTACTAGGCTATTACTGACACTCAGAGACGAAAGCTAGGGTAGCGAATGG 28000 Query 301 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAA 360 |||||||||||| ||||||| || |||||||||| ||||||| ||| | ||| || Sbjct 27999 GATTAGATACCCCAGTAGTCCTAGCTGTAAACGATGGATACTAGATGT-TGCGCGTATCG 27941 Query 361 GTGC-TCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | | | || || ||| ||||| ||||||| || |||||| |||| Sbjct 27940 ATCCGTGCAGTATCGTAGCTAACGCGTTAAGTATCCCGCCTGGGAAGTA 27892 >seq137 Length=19730 Score = 280 bits (310), Expect = 4e-73 Identities = 309/409 (76%), Gaps = 2/409 (0%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||| ||| || |||| ||||||||| |||||||||||||||||||||||| || || Sbjct 6301 TACCTGATGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGGGGATGC 6360 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 || |||||||||||| ||||||||||||| || ||||||||||| |||||| | || Sbjct 6361 AAGTGTTATCCGGAATCACTGGGCGTAAAGCGTCTGTAGGTGGTTTAGTAAGTCTGTTGT 6420 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 ||| | ||||||||| | || | |||||| | | ||||||| | | | Sbjct 6421 TAAATATTGGGGCTCAACCTTAAGCAAGCAATGGAAACTACTAGACTAGAGTATGGTATG 6480 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 || || |||||||| ||||||||||||||||||||||||||| ||| ||||||||| | Sbjct 6481 GGTAAAGGGAATTCCCAGTGTAGCGGTGAAATGCGTAGATATTGGGAAGAACACCAGCAG 6540 Query 241 CGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAG 300 |||| ||| || || | || | ||||||||| || ||||||| ||| ||| || | Sbjct 6541 CGAAAGCGCTTTACTAGGCTATTACTGACACTCAGAGACGAAAGCTAGGGTAGCGAATGG 6600 Query 301 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAA 360 |||||||||||| ||||||| || |||||||||| ||||||| ||| | ||| || Sbjct 6601 GATTAGATACCCCAGTAGTCCTAGCTGTAAACGATGGATACTAGATGT-TGCGCGTATCG 6659 Query 361 GTGC-TCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | | | || || ||| ||||| ||||||| || |||||| |||| Sbjct 6660 ATCCGTGCAGTATCGTAGCTAACGCGTTAAGTATCCCGCCTGGGAAGTA 6708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203188858368