Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq271 203 6e-50 seq758 197 3e-48 >seq271 Length=8214 Score = 203 bits (224), Expect = 6e-50 Identities = 203/258 (79%), Gaps = 4/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | || ||||| |||||||||||||||| Sbjct 5895 CTTCTTAGAGGGACAAGTGGCGTTTAGCC-ACGCGAGATTGAG-CAATAACAGGTCTGTG 5838 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | ||||||||||||||||||||||| || || || || | Sbjct 5837 ATGCCCTTAGATGTCCGGGGCCGCACGCGCGCTACACTGAAGGACTCAGCGTGTGTGTG- 5779 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| | ||| |||| | |||||| | | || | | |||||| ||||| | | |||| Sbjct 5778 CCTAGCCCGCAAGGGCGGGGTAACCCGTTGAACCGCCTTCGTGCCAGGGATTGGGGATTG 5719 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||||| | | |||||||||| || ||||||||| ||||| ||| ||||||||| Sbjct 5718 GAATTATTGCCCATGAACGAGGAATTCCCAGTAAGCGCCAGTCATAAGCTGGCGTTGATT 5659 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 5658 ACGTCCCTGCCCTTTGTA 5641 >seq758 Length=101539 Score = 197 bits (218), Expect = 3e-48 Identities = 200/258 (78%), Gaps = 7/258 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||| |||| ||||| | ||| || || | | ||||| | ||||||||||||||||| | Sbjct 6514 CTTCCTAGACGGACTGTGGGCGTCTAGTCCACGGAAGCTCCAGGCAATAACAGGTCTGAG 6455 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||||||||||||||||||||||||||| |||||||||| | | ||||| | | | Sbjct 6454 ATGCCCTTAGATGTTCTGGGCCGCACGCGTGCTACACTGAGCGGGTCAACGGG----TGA 6399 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || || || || |||||| |||| | ||||||||||||| ||| ||| Sbjct 6398 GGATGTGCGAGAGCGCTTCCTAATCT--CTAAATCCGCTCGTGCTGGGGATCGAGGCTTG 6341 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| | ||||| |||||||||| ||| ||||||| | ||||||| | |||| ||| | Sbjct 6340 CAATTTTCCCTCTTGAACGAGGAATACCTTGTAAGCGTGGGTCATCATCCCGCGCTGAAT 6281 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 6280 ACGTCCCTGCCCTTTGTA 6263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947191228928