Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq926 228 3e-57 seq137 228 3e-57 >seq926 Length=180086 Score = 228 bits (252), Expect = 3e-57 Identities = 396/562 (70%), Gaps = 18/562 (3%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||| | || |||||| |||| ||| | |||||||||| || ||||||| ||||| Sbjct 26302 CGAGCCTTAATAGGGCGTAAGTCACTGTTTATAGACCCGAACCCGGATGATCTAGCCATG 26243 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 |||||| ||||| | |||||||| |||||||||||||| ||| |||||||||||| Sbjct 26242 GCCAGGGTGAAGCTTAGGTAACACTAAGTGGAGGTCCGAACCGACTGATGTTGAAAAATC 26183 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||| ||||||||| ||||||||||| || || | || ||| |||||||||||| Sbjct 26182 AGCGGACGAGCTGTGGCTAGGGGTGAAATGCCAATCGAATCCGGAGCTAGCTGGTTCTCC 26123 Query 182 CCGAAAACTATTTAG--GTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATG 239 |||||| ||| | | || | | | | | | | |||||| ||||||||| | Sbjct 26122 CCGAAATGCGTTTTGGCGCAGCGGTTGGTGCTTAAGC-TTAGGGGTAAAGCACTGTTTCG 26064 Query 240 GCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGT-TTT 297 | ||| || | || ||||||| | |||||||| |||| | | ||| | | Sbjct 26063 GTGCGGGCTGTGAGAACG--GTACCAAATCGAGGCAAACTCTGAATAC---TAAGTGTGT 26009 Query 298 ACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 | | |||||| |||| | |||| | | | | | ||| || | || ||| Sbjct 26008 AGCCAACCAGTGAGACAGTGGGGGATAAGCTTCATTGTCAAAAGGGAAACAGCCCAGACC 25949 Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417 | ||||||||||||| |||| | ||||||| | | || ||||| | || | ||||| Sbjct 25948 ACCAGCTAAGGCCCCTAAATAATTGCTAAGTGATA--AAGGAAGTGGAAATGTTTAGACA 25891 Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 | |||| ||| |||| ||||||| || || |||||||||||||||| |||||||| ||| Sbjct 25890 ACCAGGAGGTTTGCTTAGAAGCAG-CAATCCTTTAAAGAGTGCGTAATAGCTCACTGGTC 25832 Query 478 -GAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGATCA 536 | || || ||| || ||| | |||| |||| | | ||||||| ||||||| Sbjct 25831 TAATGATTC-TGCGCCGAAAATGAACGGG-GCTAAGCAATTTGCCGAAGCTGTGGGAT-- 25776 Query 537 TTTATATGATCGGTAGGGGAGC 558 |||| |||||||||||||| Sbjct 25775 GTTATTACATCGGTAGGGGAGC 25754 >seq137 Length=19730 Score = 228 bits (252), Expect = 3e-57 Identities = 396/562 (70%), Gaps = 18/562 (3%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||| | || |||||| |||| ||| | |||||||||| || ||||||| ||||| Sbjct 8298 CGAGCCTTAATAGGGCGTAAGTCACTGTTTATAGACCCGAACCCGGATGATCTAGCCATG 8357 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 |||||| ||||| | |||||||| |||||||||||||| ||| |||||||||||| Sbjct 8358 GCCAGGGTGAAGCTTAGGTAACACTAAGTGGAGGTCCGAACCGACTGATGTTGAAAAATC 8417 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||| ||||||||| ||||||||||| || || | || ||| |||||||||||| Sbjct 8418 AGCGGACGAGCTGTGGCTAGGGGTGAAATGCCAATCGAATCCGGAGCTAGCTGGTTCTCC 8477 Query 182 CCGAAAACTATTTAG--GTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATG 239 |||||| ||| | | || | | | | | | | |||||| ||||||||| | Sbjct 8478 CCGAAATGCGTTTTGGCGCAGCGGTTGGTGCTTAAGC-TTAGGGGTAAAGCACTGTTTCG 8536 Query 240 GCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGT-TTT 297 | ||| || | || ||||||| | |||||||| |||| | | ||| | | Sbjct 8537 GTGCGGGCTGTGAGAACG--GTACCAAATCGAGGCAAACTCTGAATAC---TAAGTGTGT 8591 Query 298 ACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 | | |||||| |||| | |||| | | | | | ||| || | || ||| Sbjct 8592 AGCCAACCAGTGAGACAGTGGGGGATAAGCTTCATTGTCAAAAGGGAAACAGCCCAGACC 8651 Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417 | ||||||||||||| |||| | ||||||| | | || ||||| | || | ||||| Sbjct 8652 ACCAGCTAAGGCCCCTAAATAATTGCTAAGTGATA--AAGGAAGTGGAAATGTTTAGACA 8709 Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 | |||| ||| |||| ||||||| || || |||||||||||||||| |||||||| ||| Sbjct 8710 ACCAGGAGGTTTGCTTAGAAGCAG-CAATCCTTTAAAGAGTGCGTAATAGCTCACTGGTC 8768 Query 478 -GAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGATCA 536 | || || ||| || ||| | |||| |||| | | ||||||| ||||||| Sbjct 8769 TAATGATTC-TGCGCCGAAAATGAACGGG-GCTAAGCAATTTGCCGAAGCTGTGGGAT-- 8824 Query 537 TTTATATGATCGGTAGGGGAGC 558 |||| |||||||||||||| Sbjct 8825 GTTATTACATCGGTAGGGGAGC 8846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689584354304