Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq926 125 1e-26 seq137 125 1e-26 >seq926 Length=180086 Score = 125 bits (138), Expect = 1e-26 Identities = 177/244 (73%), Gaps = 11/244 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGT-AGTAGCTTGCGATAAGCTGCGG 68 ||||||| ||||||| ||| | |||||||||| ||| | || | ||| | ||| ||| Sbjct 26942 GGTGGATACCTTGGCATTTAGAAGCGATGAAGGGCGTGACTACCAA-CGAAATGCTCCGG 26884 Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGG 128 |||| | || | ||| ||||| || || ||||||| |||||| | | Sbjct 26883 GGAGCTGG-AAGTAAGCTTAAATCCGGAGGTTCCCGAATGAGGAAACTCTATTAT----- 26830 Query 129 TCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAG 187 | | | | |||||| |||| ||| |||| ||| ||| ||||||||||||||||| || Sbjct 26829 --ACTACCTACTGAATTCATAAGTAGGCAAGAGCAAACCTGGCGAACTGAAACATCTTAG 26772 Query 188 TAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGA 247 |||| ||||||||||| ||| | ||||| | ||||| |||||||||||||||| | Sbjct 26771 TAGCCAGAGGAAAAGAAAGCAAAAGCGATTCTCTTAGTAGCGGCGAGCGAAATGGGAACA 26712 Query 248 GCCT 251 |||| Sbjct 26711 GCCT 26708 >seq137 Length=19730 Score = 125 bits (138), Expect = 1e-26 Identities = 177/244 (73%), Gaps = 11/244 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGT-AGTAGCTTGCGATAAGCTGCGG 68 ||||||| ||||||| ||| | |||||||||| ||| | || | ||| | ||| ||| Sbjct 7658 GGTGGATACCTTGGCATTTAGAAGCGATGAAGGGCGTGACTACCAA-CGAAATGCTCCGG 7716 Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGG 128 |||| | || | ||| ||||| || || ||||||| |||||| | | Sbjct 7717 GGAGCTGG-AAGTAAGCTTAAATCCGGAGGTTCCCGAATGAGGAAACTCTATTAT----- 7770 Query 129 TCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAG 187 | | | | |||||| |||| ||| |||| ||| ||| ||||||||||||||||| || Sbjct 7771 --ACTACCTACTGAATTCATAAGTAGGCAAGAGCAAACCTGGCGAACTGAAACATCTTAG 7828 Query 188 TAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGA 247 |||| ||||||||||| ||| | ||||| | ||||| |||||||||||||||| | Sbjct 7829 TAGCCAGAGGAAAAGAAAGCAAAAGCGATTCTCTTAGTAGCGGCGAGCGAAATGGGAACA 7888 Query 248 GCCT 251 |||| Sbjct 7889 GCCT 7892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918391495616