Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq271 542 9e-152 seq758 477 3e-132 seq313 138 4e-30 >seq271 Length=8214 Score = 542 bits (600), Expect = 9e-152 Identities = 346/377 (92%), Gaps = 12/377 (3%) Strand=Plus/Plus Query 169 CCAGT-TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG 227 ||||| |||| | | ||| |||||||| ||||||||| |||||||||||||||| ||| Sbjct 969 CCAGTCTCCGTTCAACTGAATAAGTAAAGAAACGATAAAAGTAGTGGTATTTCACTGGCG 1028 Query 228 CCGAAAC-----------GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGT 276 ||| | | ||||||||||||| |||||||||||| ||| |||||| ||| Sbjct 1029 CCGCACCAAGATTGGCCCGGCTCCCACTTATGCTACACCTCTCATGTCTCTTCACAGAGT 1088 Query 277 CGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCC 336 ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 1089 CGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCCGATTCTGCCAAGCCCGTTCC 1148 Query 337 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCA 396 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1149 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCA 1208 Query 397 TGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCC 456 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1209 TGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCC 1268 Query 457 CGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAA 516 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1269 CGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAA 1328 Query 517 ATCACATTGCGTCAACA 533 |||||||||||||| || Sbjct 1329 ATCACATTGCGTCACCA 1345 Score = 105 bits (116), Expect = 2e-20 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||| |||| | ||| |||| || ||| |||| | ||||||||||||||||||| Sbjct 716 CTTTCGCTCCAGGCGAGGTTTCCGTCCTCGCTGAGCTCACCTTAGGACACCTGCGTTACC 775 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||||||| ||||||||| |||||||||| ||||||| ||| ||| |||||| Sbjct 776 GTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACCGTCTTCAGAGCGGATC 835 Query 127 G 127 | Sbjct 836 G 836 >seq758 Length=101539 Score = 477 bits (528), Expect = 3e-132 Identities = 427/528 (81%), Gaps = 7/528 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||| |||| ||||||||||||||| |||| | ||| |||||||| |||| | Sbjct 2827 CTTTTGCGCTACGTGAGATTTCTGTTCTCACTGAGCTCATCTTTGGACACCTTCGTTGTC 2886 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 | || ||||||||||||||||||||||||||| ||| | ||| | | | || Sbjct 2887 TTGTAGAAGATGTGCCGCCCCAGCCAAACTCCCCTCCTAAATGTGTGCTGGGCTGTGGTC 2946 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTG- 185 || | | | || || | |||| | |||| | || || ||| | || Sbjct 2947 TGCACAA-ACGCACATTGGTTCTAGAATAGAGTCG-TAAAACTCA--TCCACACCAACCC 3002 Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTT 245 | |||||||| || | | ||||||||||||||| ||| || || ||||||| | Sbjct 3003 AGTAAGTAAAGCAAGACTGGGAGTAGTGGTATTTCACGGACGCGCAAGCG-CTCCCACCT 3061 Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 || |||| |||| ||| | |||||||| | || |||||||||||||||||||||||| Sbjct 3062 ATGCTACGCCTCCCAACTTGCTTCACAAAATTAGAATAGAGTCAAGCTCAACAGGGTCTT 3121 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 |||||||||| |||| |||| |||||||||||| |||||||||||||||||| || |||| Sbjct 3122 CTTTCCCCGCCGATTTCGCCGAGCCCGTTCCCTCGGCTGTGGTTTCGCTAGA-AGCAGAT 3180 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3181 AGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 3240 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| || Sbjct 3241 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCTGTTTACCCGCGCTTGATTGAATCTC 3300 Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 3301 TTCACTTTGACATTCAGAGCACTGAGCAGAAATCACATTGCGTCATCA 3348 >seq313 Length=308815 Score = 138 bits (152), Expect = 4e-30 Identities = 89/96 (93%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 |||||||||||||||||||||||||||| |||| |||| |||||||||||| |||||||| Sbjct 98699 CAAGCTCAACAGGGTCTTCTTTCCCCGCCGATTTCGCCGAGCCCGTTCCCTCGGCTGTGG 98640 Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTC 383 |||||||||| || ||||||||||||| |||||||| Sbjct 98639 TTTCGCTAGA-AGCAGATAGGGACAGTAGGAATCTC 98605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635184858048