Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq926 250 8e-64 seq137 250 8e-64 seq510 86.0 2e-14 >seq926 Length=180086 Score = 250 bits (276), Expect = 8e-64 Identities = 398/566 (70%), Gaps = 19/566 (3%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| |||| ||||||||||| |||| ||| ||| |||| |||||| || Sbjct 24616 TCGACTTGTAGGTCTTGCAGTCAAGCTTCCTTATGCCTTTATACTCGAAGACTGATTTCC 24675 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||||| |||||| |||||||| |||||||||||| |||| ||||| | |||||||||| Sbjct 24676 GACCAGTCTGAGGAAACCTTTGCACGCCTCCGTTACTTTTTAGGAGG-CGACCGCCCCAG 24734 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGC--CAAGGTTAGATATCC 178 | ||||| |||||| || | ||| | || | | | | ||| |||||| | Sbjct 24735 TCAAACTGCCCACCTGGAAATGTTCTTTGGCCGGTTAACGACTATCAAAGTTAGAATTTT 24794 Query 179 ACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAA---CCACTAGCGTGGCCGCATC 235 | | | |||||||||| ||| | | ||| | | ||| | | || Sbjct 24795 AGTTTACTTAGAGTGGTATCTCATTGATGGCTCGAGTATATCCAAAAATATACTT---TC 24851 Query 236 ATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAG 295 ||| ||||||| ||| || | |||| ||| || | |||| |||||||| ||| ||| Sbjct 24852 TTAGCCTCCCACATATACTGCGCAAAATAAACCCAAAGTCAATCCCAAGCTACAGTAAAG 24911 Query 296 GTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTT 354 | | |||||||| |||| | || | | ||||||| || | | | |||| Sbjct 24912 CTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACAATTCTATTT 24971 Query 355 CACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACT 414 | ||| | || | |||||||| | | |||||||||| ||||||| |||||||||| Sbjct 24972 CGCCGAGTCTCTCTCTGAGACAGTACCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACT 25031 Query 415 TACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGG 474 |||||||||||||||||||||||||||||| ||||||||||| |||||||| || ||| Sbjct 25032 TACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGG 25091 Query 475 GCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAG 534 |||||| |||| || | | | | | || || || ||||||||||| | Sbjct 25092 GCTTCAGTTACTAGCTTTGC---CAATG------ACTAACCAGCTTCCTTAACCTTCCGG 25142 Query 535 CACCGGGCAGGCGTCAGTCCGTATAC 560 ||| ||||||||||||| || |||| Sbjct 25143 CACTGGGCAGGCGTCAGCCCCCATAC 25168 >seq137 Length=19730 Score = 250 bits (276), Expect = 8e-64 Identities = 398/566 (70%), Gaps = 19/566 (3%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| |||| ||||||||||| |||| ||| ||| |||| |||||| || Sbjct 9984 TCGACTTGTAGGTCTTGCAGTCAAGCTTCCTTATGCCTTTATACTCGAAGACTGATTTCC 9925 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||||| |||||| |||||||| |||||||||||| |||| ||||| | |||||||||| Sbjct 9924 GACCAGTCTGAGGAAACCTTTGCACGCCTCCGTTACTTTTTAGGAGG-CGACCGCCCCAG 9866 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGC--CAAGGTTAGATATCC 178 | ||||| |||||| || | ||| | || | | | | ||| |||||| | Sbjct 9865 TCAAACTGCCCACCTGGAAATGTTCTTTGGCCGGTTAACGACTATCAAAGTTAGAATTTT 9806 Query 179 ACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAA---CCACTAGCGTGGCCGCATC 235 | | | |||||||||| ||| | | ||| | | ||| | | || Sbjct 9805 AGTTTACTTAGAGTGGTATCTCATTGATGGCTCGAGTATATCCAAAAATATACTT---TC 9749 Query 236 ATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAG 295 ||| ||||||| ||| || | |||| ||| || | |||| |||||||| ||| ||| Sbjct 9748 TTAGCCTCCCACATATACTGCGCAAAATAAACCCAAAGTCAATCCCAAGCTACAGTAAAG 9689 Query 296 GTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTT 354 | | |||||||| |||| | || | | ||||||| || | | | |||| Sbjct 9688 CTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACAATTCTATTT 9629 Query 355 CACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACT 414 | ||| | || | |||||||| | | |||||||||| ||||||| |||||||||| Sbjct 9628 CGCCGAGTCTCTCTCTGAGACAGTACCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACT 9569 Query 415 TACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGG 474 |||||||||||||||||||||||||||||| ||||||||||| |||||||| || ||| Sbjct 9568 TACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGG 9509 Query 475 GCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAG 534 |||||| |||| || | | | | | || || || ||||||||||| | Sbjct 9508 GCTTCAGTTACTAGCTTTGC---CAATG------ACTAACCAGCTTCCTTAACCTTCCGG 9458 Query 535 CACCGGGCAGGCGTCAGTCCGTATAC 560 ||| ||||||||||||| || |||| Sbjct 9457 CACTGGGCAGGCGTCAGCCCCCATAC 9432 >seq510 Length=250633 Score = 86.0 bits (94), Expect = 2e-14 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 393 GCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATA 452 ||||||| |||||| ||||| ||||||| |||||||||||||||||| ||||| ||||| Sbjct 78641 GCCATTCATGCAGGACGGAATTTACCCGTCAAGGAATTTCGCTACCTAAGGATTCTTATA 78700 Query 453 GTTACCACCGCCGTT 467 |||| || | |||| Sbjct 78701 GTTAGAACTGTCGTT 78715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702384235776