Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq926 147 5e-33 seq137 147 5e-33 >seq926 Length=180086 Score = 147 bits (162), Expect = 5e-33 Identities = 183/252 (73%), Gaps = 18/252 (7%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||||||||||||||| |||||| || || Sbjct 28259 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATCAGGTACCGTCATA-------AC-- 28309 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || || ||| |||||||| |||||||| || || | ||| ||| |||||| Sbjct 28310 --------TTCTTTCCTGATAAAAGAGGTTTACAACCCACAGG-CATTCTTCCCTCACGC 28360 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||| |||| || ||| |||||| || ||||| ||||||||||| |||||| Sbjct 28361 GGTATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTTCCGTAG 28420 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 ||| |||||||||||||||||||| ||||| || | |||||||| | | ||| || Sbjct 28421 AAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAAACCAGCTACTGAT 28480 Query 241 CGTAGGCTAGGT 252 ||| | || ||| Sbjct 28481 CGTCGCCTTGGT 28492 >seq137 Length=19730 Score = 147 bits (162), Expect = 5e-33 Identities = 183/252 (73%), Gaps = 18/252 (7%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||||||||||||||| |||||| || || Sbjct 6341 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATCAGGTACCGTCATA-------AC-- 6291 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || || ||| |||||||| |||||||| || || | ||| ||| |||||| Sbjct 6290 --------TTCTTTCCTGATAAAAGAGGTTTACAACCCACAGG-CATTCTTCCCTCACGC 6240 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||| |||| || ||| |||||| || ||||| ||||||||||| |||||| Sbjct 6239 GGTATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTTCCGTAG 6180 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 ||| |||||||||||||||||||| ||||| || | |||||||| | | ||| || Sbjct 6179 AAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAAACCAGCTACTGAT 6120 Query 241 CGTAGGCTAGGT 252 ||| | || ||| Sbjct 6119 CGTCGCCTTGGT 6108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068790102912