Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq758 347 4e-93 seq271 284 4e-74 seq25 114 4e-23 >seq758 Length=101539 Score = 347 bits (384), Expect = 4e-93 Identities = 384/506 (76%), Gaps = 27/506 (5%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || ||||||||||||| || |||| | ||||| ||| ||||| |||||||||||| Sbjct 7377 GTTCTCATTCCAATTAGAAAACCCGTTGG-GCCCTCTATTGCTATTTCTTGTCACTACCT 7435 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| || || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7436 CCCGGTATCCGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTC 7495 Query 121 TCTCAGGCTCCCTCTCCGGA--ATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 |||||||||||||||||||| ||| |||| | |||| |||||| ||||||| Sbjct 7496 TCTCAGGCTCCCTCTCCGGAGTCTCGCACCC--ACGATCCGTCACCCGTCACAACCATGG 7553 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238 || | || || | ||||||| |||||||||||| |||||||||||| || | |||| Sbjct 7554 TAAGACAATACCTTACCATCCAAAGTTGATAGGTCAGAAATTTGAACGATGCGTCGC--A 7611 Query 239 CTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTG 298 || | | |||||| | ||| ||| ||||||||||| | ||| Sbjct 7612 CTAA----CGTGCGATCAGAAAAGAAATTGTGAATCACCAA-------------ACATTG 7654 Query 299 GTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCT 358 | ||| ||||| | || ||| | | || | | ||| ||||||||||||||| Sbjct 7655 G-TTTGTATCTCCAATTTATACCACGACATAAATGTCGCTTTAAGGCATGTATTAGCTCT 7713 Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418 |||||||| |||| |||||| ||||| || ||| ||| || |||| ||| ||| |||| Sbjct 7714 AGAATTACTACGGGTATCCAAGTAGT-AGTTACCATCGAAGAAACTATAGCTGTTTTACC 7772 Query 419 GAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTT 478 ||||||||||||||||| |||| | | || ||||||| || ||||||||||| || | Sbjct 7773 GAGCCATTCGCAGTTTCGTTGTACAATTCACTCATACTTACACTTGCATGGCTTAGTCCT 7832 Query 479 TGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||| || |||||||| Sbjct 7833 TGAGACAAGCATAT-ACCACTGGCAG 7857 >seq271 Length=8214 Score = 284 bits (314), Expect = 4e-74 Identities = 233/281 (83%), Gaps = 3/281 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||||| | || | | |||| || |||| ||||| ||||||||||| Sbjct 6804 GTACTCATTCCAATTACGGGGCCTCGATAGAGTCCCGTATTGTTATTTCTTGTCACTACC 6863 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| | ||| |||||||||||||||||||||||||||||| |||||||||||||| Sbjct 6864 TCCCCGTGCCAGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGT 6923 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||| |||||||||||||||||||||||| |||| |||||||||||| | || ||| Sbjct 6924 TTCTCATGCTCCCTCTCCGGAATCGAACCCTGATTCTCCGTTACCCGTTACAAGCAAGGT 6983 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 | ||| |||||| |||||| ||||||||||||| | ||||| || | |||||||| Sbjct 6984 AAGCCTAGCACCTACCTTCGAAACTTGATAGGGCAGACACTTGAAAGATACGTCGCCGGC 7043 Query 240 TCAAGGCCATGCGATTCGTT--AAGTTATTATGAATCACCA 278 | |||||||||||| || | ||||||| || |||||| Sbjct 7044 ACCAGGCCATGCGATCCGCTACAAGTTATCCAGAGTCACCA 7084 Score = 188 bits (208), Expect = 2e-45 Identities = 143/166 (86%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-AGGTACTATCAAAT 399 ||||||||||||||||||||||||||||| |||||||| |||| | | |||| ||| || Sbjct 7213 TTAGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGCACAAGTACGATCTAAG 7272 Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTA 458 ||| |||||||| ||||||||||||||| ||||| || | | | || | |||||| Sbjct 7273 AAATATTAACTGATCTAATGAGCCATTCGCGGTTTCGCTATTCACAACAGCCTGTACTTA 7332 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7333 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 7378 >seq25 Length=39765 Score = 114 bits (126), Expect = 4e-23 Identities = 91/108 (84%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || ||||||||||||| || |||| | ||| | ||| ||||| |||||||||||| Sbjct 19625 GTTCTCATTCCAATTAAAAAACCCCTTGGGGCC-TCTATTGCTATTTCTTGTCACTACCT 19567 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT 108 |||||| || |||||||||||||||||||||||||||||||||| ||| Sbjct 19566 CCCCGTATCCGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGAT 19519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510386013696