Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq759 248 7e-61 >seq759 Length=98512 Score = 248 bits (274), Expect = 7e-61 Identities = 1058/1648 (64%), Gaps = 49/1648 (3%) Strand=Plus/Minus Query 65084 GTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTCTTGAGG 65143 || |||| ||| |||| | | || ||||| || | |||||||| || ||||| || Sbjct 49385 GTAAACTTGATGGCATCTGTCGACGGTTTGGTTCTCAAATAGTACAGTCCTGTCTTCAGT 49326 Query 65144 CCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGGCCACA 65203 || || ||| ||||||||||||| || | ||| || ||||| | |||| Sbjct 49325 CCTGCCTTCCAGCCATAGAAATGCATGGAGCTGAGCTTTCCAATGTTCGGGGCTGCCATG 49266 Query 65204 TGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAATG 65263 || || |||| ||| |||||||||||| ||| || || || || | |||| Sbjct 49265 TGAATGTTCATGCTCTGCGACTGATCGATGTAGGCACCCCGGTCAGCGGCGAGATCAAGA 49206 Query 65264 ATACGACGTCCCGAT-ATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATTGGAAT 65322 ||||| | || | | || |||||||| |||||||| ||| || | || ||||| Sbjct 49205 ATACG-CTTCTGGCTGATTTCCCAGACAGTCTTGTAGAGGGCGCGGATATCTGCAGGAAT 49147 Query 65323 CTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGACTCTGA 65382 || |||| || || |||||| ||||| ||||| || ||| | | | Sbjct 49146 TTCGGGGATGTTTTGAACAGAACCATTCGCTGCAACTATGCGGTTCTTCATGG--TAGAA 49089 Query 65383 CCACAAACCCAAATCGAT--AAGATGTTGAACCAAGTGACGATTGATGACTTGGAACTCG 65440 | || | || || | | ||||| | |||| |||| || | | |||||| Sbjct 49088 TCCCACAGCCCAAGCTTTTGAAGATCCTTTACCAGGTGAGTGTTCACAATGCAGAACTCA 49029 Query 65441 CCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGTTG 65500 || |||| || | || || | || || ||| || || ||| | ||| |||| Sbjct 49028 CCAGACAACACCCTTCGTGTGTACAGATTAGATGTGTAAGGCTCGAAGCACTCATTGTTA 48969 Query 65501 CCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGCAAT 65560 || ||||| || | || || || || ||||| ||||| || | || ||| || || | Sbjct 48968 CCGAGAATCTGCGATGTTGAAGCGGTAGGCATTGGAGCAACGAGCAGTGAATTGCGGACA 48909 Query 65561 CCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCGTCGACA 65620 || || || || || | || | | ||||||| ||| |||| || | | Sbjct 48908 CCACTCTTTAGAACCTTCTCCCGAAGGCCATCCCAGTCCCA--TCGGCCAGAAGTGGGCT 48851 Query 65621 TCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGC--CGGTGAACCGAGGAAAC 65678 || ||| ||| | || || | || | || | ||| ||||| | | | Sbjct 48850 TC-ACGCCCCAAAGGTCAAACTGGAACTGACCCTT--TGACATCGGGGAACCAATGTACG 48794 Query 65679 TATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAA 65738 | ||||| |||| ||| | |||| ||| |||||||| | ||| || || | Sbjct 48793 TCTCGTAAGGACCCTGCTCTGAAGACAGTTCACAACTGGTCTCTACAGCGCTGAAGTAGA 48734 Query 65739 TGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCA 65798 ||| |||||||| ||| | ||||| || | || ||||| ||||||| | || Sbjct 48733 GGGTTTCGAAAATATCCTTATTCAACTCACGAGCTCCCTCACTCTCAAACGGCATGCGCA 48674 Query 65799 TCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAAT 65858 | || | ||| ||||| || || || |||| ||| ||||| || || || || |||| | Sbjct 48673 TGAGAATAAATGTGTCTGCAAGCCCCTGAATTCCGATACCAATTGGGCGGTGGCGCATGT 48614 Query 65859 TGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGC 65918 ||||| | || || | | ||| ||| | |||| ||||| | || | ||||| Sbjct 48613 TGGAATTCTTAGCTTCCTGGATAGGATAGAAGTTGACGTCGATTACTTTGTTAAGATTGC 48554 Query 65919 GTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAAT---GTTTAGGACGAT 65975 | | |||| | | | ||| || | |||| |||| | | | | || || Sbjct 48553 GCGCAACCATCTTCGTCACACGGCGAAGGGCTTCGTGATCATATGACGGAGTGGAACCAT 48494 Query 65976 CGGGAGTGCCGGAC--ACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGC 66033 | | ||||| | ||||||||| ||||||| ||| || | |||||| ||||| Sbjct 48493 C-----TTCCGGAACAATTACAAACTTGTTGAGGGCAATAGAAGCCAAGTTGCAAACAGC 48439 Query 66034 TATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGT--ATG 66091 | ||| || || || |||||||| ||||| || ||||| ||||| | || | ||| Sbjct 48438 AACCTCATCCGGGGCAGTATACTCAACAATCTCTGTGCAAAGATTG--GAAGATTTGATG 48381 Query 66092 GTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGA 66151 || || | || || || || ||||| || || || ||||||||||| | |||||||||| Sbjct 48380 GTTCCGAGGTTTTGCTGGTTGCTCTTCCGGTTACAAGCATCCTTGTAGAGCATGTACGGA 48321 Query 66152 GTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTA 66211 | || || |||| |||| || | || || | ||| | | || ||| | | Sbjct 48320 TTTCCAGTTTCAATCTGGGCTTCGAGAATAGCATACCAGATCTTTCTCGCGCTCATGGAA 48261 Query 66212 C---GTAC-CGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACC 66267 | || | || || |||| ||||| | |||||| || | ||| || |||| Sbjct 48260 CTGCGTGCTCGGCCGTCCTTC----TCGTACTTTTCGTACAGCTCTTCAAA---TTCAGT 48208 Query 66268 -CCATA--CTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATC 66324 ||||| | |||| ||||| || ||| | ||||| | |||||||| | ||||| Sbjct 48207 GCCATAGACGTCGGCCAGACCAGGGGACTCATTCGGACAGAAAAGCGACCACTGGCCATC 48148 Query 66325 CTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGC 66384 ||| || || |||||| || || || ||||| ||| |||||||||| || || || Sbjct 48147 AGCTTCGACGCGCTTCATAAAGAGGTCTGGGATCCATAGGCCGTAGAAGAGGTCACGAGC 48088 Query 66385 TCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATG 66444 | || || || |||| ||||| ||||| | || || || || | ||| || || || Sbjct 48087 CCTCTGTTCTTCCTTGCCATGATTCTTGCGAAGATCAAGAAAGTCGAGGATATCTGCGTG 48028 Query 66445 CCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTA 66504 ||| || |||| ||||| || || | ||| | || || |||||||||||||| || || Sbjct 48027 CCAAGGCTCCAAATAGATAGCAAATGCACCCTTCCGCTTCCCGCCACCTTGGTCCACATA 47968 Query 66505 GCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGT 66564 | ||| | ||||||||||| | ||| || || | ||||| || | || ||||| Sbjct 47967 CCTAGCTGTGTCATTGAAGACACGAAGCATAGGCACAATTCCGTTCGACGTACCGTTGGT 47908 Query 66565 GCCGTCGATGGGGGATCCTCGTGC-CCGTATATCGTGAACATTCAGACCAATACCACCGG 66623 || |||| || | | |||| || || | ||| | | || ||||| || || | Sbjct 47907 ACCACGGATGTACGA-CTTTGTGCATCGGATGTTGTGGATAGACAATCCAATGCCGCCTG 47849 Query 66624 CCGTCTTCGAGATGGCAGCACAATCG---GCCACTGTCCGGAATATGCCGTCAATGGAGT 66680 | | ||| || ||| ||| | | || | | |||| | ||||| |||||||||| Sbjct 47848 CGGCCTTGGAAATGATAGCGC-AGCGCTTGAGAGTGTC--ATAAATGCCTTCAATGGAGT 47792 Query 66681 CACCCTTGATGGTCAGGAGGTAGCATGA 66708 | | | || || || ||| |||| || Sbjct 47791 CCTCAGTCATAGTGAGAAGGAAGCAAGA 47764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397563513196640