Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq2756 468 2e-129 seq3345 100 9e-19 >seq2756 Length=33385 Score = 468 bits (518), Expect = 2e-129 Identities = 408/498 (82%), Gaps = 8/498 (2%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 32150 TACGCTCGCAAGGGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 32209 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||||||||||||||||| |||||||| || || || Sbjct 32210 GTGGTTTAATTCGATGCAACGCGAAGAACCTTACCAGGGCTTGACATACTACGAATTTTC 32269 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||| | ||||| ||| | || ||||||| ||||||| ||||||||| Sbjct 32270 TTGAAAGAGAAAAGT-GCCTTC-GGGAATGTAGATACAGGTGGTGCATGGCTGTCGTCAG 32327 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct 32328 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATTTTTAGTTAC 32387 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || ||| |||||| ||||| ||||||||||||||||||||||||||||| ||| Sbjct 32388 CA--ATT-CGTTGGGTTCTCTAGAAAGACTGCCGGTGACAAACCGGAGGAAGGTGAGGAT 32444 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| ||| ||||||||||||| |||||||||||||||||||||||| || || Sbjct 32445 GACGTCAAGTCAGCATGCCCCTTATGTCCTGGGCTACACACGTGCTACAATGGTTAAGAC 32504 Query 361 AAAGGGCAGCGAAACCG-CGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATT 419 |||| | ||||| | | ||| ||| |||| | |||| || || ||||| |||| Sbjct 32505 AAAGAGTTGCGAACTTGTAAAAGTC-AGCTAATCTCGTAAACTTAGCCTAAGTTCAGATT 32563 Query 420 GTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATGCT 478 |||| |||||||||| || |||||| |||||||||||||||||| | ||||| || | Sbjct 32564 GTAGGCTGCAACTCGCCTGCATGAAGTTGGAATCGCTAGTAATCGCTGGTCAGCTATACA 32623 Query 479 ACGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 32624 GCGGTGAATCCGTTCCCG 32641 >seq3345 Length=67807 Score = 100 bits (110), Expect = 9e-19 Identities = 90/112 (80%), Gaps = 1/112 (1%) Strand=Plus/Minus Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445 ||| |||| | |||| || || ||||| |||||||| |||||||||| || |||||| Sbjct 67793 AGCTAATCTCGTAAACTTAGCCTAAGTTCAGATTGTAGGCTGCAACTCGCCTGCATGAAG 67734 Query 446 CTGGAATCGCTAGTAATCGTAGATCAGC-ATGCTACGGTGAATACGTTCCCG 496 |||||||||||||||||| | ||||| || | |||||||| |||||||| Sbjct 67733 TTGGAATCGCTAGTAATCGCTGGTCAGCTATACAGCGGTGAATCCGTTCCCG 67682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503948683520