Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq2756 206 6e-51 >seq2756 Length=33385 Score = 206 bits (228), Expect = 6e-51 Identities = 172/208 (83%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 |||||| || || ||||| | | | ||||||| |||| || ||||||||||||||| Sbjct 31718 TTTACAGACCAAAATCCTTCATCC-CTCACGCGGTATTG-CTCCGTCAGGCTTTCGCCCA 31661 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || ||||| ||||||||||||||| |||||||||| |||||||||||| ||||| Sbjct 31660 TTGCGGAAAATTCCTCACTGCTGCCTCCCGGAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 31601 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||| || | |||||| ||||| ||| |||||| ||||||||||||||||||||||| Sbjct 31600 GTGGCTGGTCGTTCTCTCAAACCAGCTACTGATCGTGGCCTTGGTGAGCCATTACCTCAC 31541 Query 182 CAACTAGCTAATCCGACCTAGGCTCATC 209 |||| |||||||| | | | ||||||| Sbjct 31540 CAACAAGCTAATCAGGCGTGAGCTCATC 31513 Score = 91.5 bits (100), Expect = 3e-16 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 135 CTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 |||||| ||||| ||| |||||| ||||||||||||||||||||||||||| |||||||| Sbjct 4 CTCTCAAACCAGCTACTGATCGTGGCCTTGGTGAGCCATTACCTCACCAACAAGCTAATC 63 Query 195 CGACCTAGGCTCATC 209 | | | ||||||| Sbjct 64 AGGCGTGAGCTCATC 78 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071963423360