Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq3345 190 5e-46 >seq3345 Length=67807 Score = 190 bits (210), Expect = 5e-46 Identities = 300/415 (72%), Gaps = 15/415 (4%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | ||||||||| |||||||| | |||||| ||||| ||| Sbjct 66534 CCACAACTCAT-CCGCTGA-TTTTTCAACATCAGTCGGTTGGTACCTCCACTTAGT-GTT 66590 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| || ||| || ||| |||| || |||||| | || || ||||||||| | Sbjct 66591 ACCTAAGCTT-CACACTGGCCAT-GGTTAGATCATCAGGGTT-CGGGTCTATAAATTAT- 66646 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTA----AGC 184 ||||| | ||||| | || |||||||| | ||| | |||| |||| || | | Sbjct 66647 GACTAAAAGCCCTTATCAGGCTCGCTTT-CACTATGGCTCCGACATTCTCTTGTCTTAAC 66705 Query 185 TTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA 244 ||||||| | ||||||| | |||| | ||| ||| ||| ||| | || Sbjct 66706 CTTGCCACAACCTACAAGTCGCCAGCTCATTCTTCAACAGGCACGACGTCGAGCGTTAAG 66765 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 | || | |||||||||| | |||| ||||| | ||||||||||||||||| ||||| Sbjct 66766 TCGCTCTTCGACTGCTTGTAAACTTACGATTTCATGTTCTATTTCACTCCCCTC-CCGGG 66824 Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| |||||||||| ||||||| ||||||||||||| | |||||| ||||||| Sbjct 66825 GTTCTTTTCACCTTTCCCTCGCGGTACTGGTTCACTATCGGTTATTCAGTAATATTTAGT 66884 Query 365 CTT-GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 ||| |||| |||||| | ||||| | ||||| |||| || ||||||| Sbjct 66885 CTTACGAGG-TGGTCCTCGTGGATTCAAAAGGGGTTTCACGTGTCCCTTCCTACT 66938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241557636608