Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq2756 325 1e-86 >seq2756 Length=33385 Score = 325 bits (360), Expect = 1e-86 Identities = 278/341 (82%), Gaps = 3/341 (1%) Strand=Plus/Plus Query 162 CGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCT 221 || |||||||||| |||||| |||||| |||| |||||||| |||||||||||| | | Sbjct 31523 CGCCTGATTAGCTTGTTGGTGAGGTAATGGCTCACCAAGGCCACGATCAGTAGCTGGTTT 31582 Query 222 GAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCA 281 ||||| || | |||||| ||| |||||||||||| ||| |||||| |||||||||||| Sbjct 31583 GAGAGAACGACCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTCCGGGAGGCAGCA 31642 Query 282 GTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAG 341 ||| ||||| || | |||||||| ||||||||| | ||||| ||||||||| ||||||| Sbjct 31643 GTGAGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATACCGCGTGAGGGATGAAG 31702 Query 342 GCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGGAA 399 | || || ||||| |||| | |||||| |||| | |||||||||||||||| || Sbjct 31703 GATTTTGGTCTGTAAACCTCTTTTCTCAAGAAAGAAGTTCTGACGGTACTTGAGGAATAA 31762 Query 400 GCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGA 459 || ||||||||| |||||||||||||||||||||||| || || ||||||||||||| Sbjct 31763 GCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGGGGATGCAAGCGTTATCCGGA 31822 Query 460 ATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 || | | |||||||||| | |||||| |||| ||||||| Sbjct 31823 ATGA-TTGGGCGTAAAGCGCCTGTAGGTTGTTTATTAAGTC 31862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497548901888