Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq3345 178 4e-42 >seq3345 Length=67807 Score = 178 bits (196), Expect = 4e-42 Identities = 367/533 (69%), Gaps = 20/533 (4%) Strand=Plus/Minus Query 33 TAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGG 92 |||||||||| || ||||||| |||||||||| ||||| | |||||||| ||| Sbjct 66638 TAGACCCGAACCCTGATGATCTAACCATGGCCAGTGTGAAGCTTAGGTAACACTAAGTGG 66579 Query 93 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 |||| | |||| ||| |||||||||||| || ||||||| ||||| ||||||||||| | Sbjct 66578 AGGTACCAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATTC 66519 Query 153 TAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAG--GTAGTGCCTCAAGT 210 || | || ||| ||||||| |||| |||||| || || | || | | | || Sbjct 66518 CAATCGAATCAGGAGCTAGCTGGATCTCCCCGAAATGCGTTGAGGCGCAGCGGTTAATGT 66459 Query 211 ATCACCATCGGGGGTAGAGC-ACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCA 269 || | | |||||| ||| |||||| ||| | ||| | | | |||||| || Sbjct 66458 TTCTTC-TTAGGGGTAAAGCTACTGTTTTGG-TGCGGGCTGCGAGAGCGGTACCAATTCA 66401 Query 270 TTGCAAACTCCGAATGCGCATCAGTT---TTACCGCGGGAGTGAGGGCATGGGTGCTAAG 326 |||||||| |||| | | ||| ||| | |||||| |||| | |||| Sbjct 66400 AGGCAAACTCTGAATACTAAGACGTTTAGTTAAC----CAGTGAGACATTGGGGGATAAG 66345 Query 327 -GTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTA 385 || ||| | ||||| || | || || || |||||||||||| |||| | |||| Sbjct 66344 CTTCAGTG-TCAAGAGGGAAACAGCCCAGATTACTAGCTAAGGCCCCTAAATAATTGCTA 66286 Query 386 AGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCAT 445 ||| | || || || |||||| ||||| |||| ||| || ||||||| || Sbjct 66285 AGTGGTA--AAGGAGGTGGGATTGCAGAGACAATCAGGAGGTTTGCCCAGAAGCAG-CAA 66229 Query 446 TCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGG 505 || |||||||||||||||| |||||||| ||||| || ||| || ||| | | || Sbjct 66228 TCCTTTAAAGAGTGCGTAATAGCTCACTGTTCGAGTGATCCTGCGCCGAAAATGA-CTGG 66170 Query 506 TATTAAGTTGTCTACCGAAGCAGTGGGATCATTTATATGATCGGTAGGGGAGC 558 | |||| | | ||||||| || ||| | | | |||||||||||||| Sbjct 66169 GACTAAGCAATTTGCCGAAGCTGTAAGAT--GTCAAAACATCGGTAGGGGAGC 66119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689542350848