Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq385 131 7e-25 seq2901 109 2e-18 seq2180 93.3 2e-13 seq1077 93.3 2e-13 seq1029 86.0 3e-11 >seq385 Length=9410 Score = 131 bits (144), Expect = 7e-25 Identities = 244/354 (69%), Gaps = 11/354 (3%) Strand=Plus/Plus Query 626175 CGAGAATGAAGCGTGCCAACTACATCGAATGGGAGGACTACTTTATGATGCTGGCCCTTC 626234 ||| || |||||| | ||| ||| || ||| | |||||||| ||| | | || | | Sbjct 3176 CGACAACGAAGCGCGAGAACACCATTGACTGGCACGACTACTTCATGTCGGTCGCGATGC 3235 Query 626235 TCTCGGCCCAGCGCTCCAAGGACCCCAACACTCAGGTCGGGGCCTGCATCGTCAACGAGG 626294 | ||||| || |||||||| || |||| ||||| || || ||||||||| || | Sbjct 3236 TGTCGGCGTTCCGTTCCAAGGATCCGAACAAGCAGGTGGGCGCGTGCATCGTCGACCCGA 3295 Query 626295 A---CAAGCGCGTCGTGTCTATGGGCTACAACGGCTTCCCGCGTGGCTGCAATGACGACG 626351 | | ||||| ||||| || ||||||||||||||||| | || |||| ||||||| Sbjct 3296 AGCGCCAGCGCATCGTGGGCATTGGCTACAACGGCTTCCCATGGGGATGCAGCGACGACG 3355 Query 626352 TCTTTCCTTGGAAGCGCGATAGCGCATGTGAGGA-CATTCTCGACAGCAAGAGCCTCTAT 626410 | || ||| ||||| | || | || || || ||||| | ||| || || Sbjct 3356 ATCTGCCGTGG--GCGCG----CACAGG-GACGAGCAAGCTCGAGACGAAGCATCTATAC 3408 Query 626411 GTGGTTCACGCCGAACTCAACGCCATCCTCAACAAGAACGCCAAGTCTATCAAGGGCTGC 626470 ||| ||||| || | || || ||| ||||||||||| | |||| || |||||||| Sbjct 3409 GTGTGCCACGCGGAGATGAATGCTATCTTCAACAAGAACTGCTCGTCTCTCGAGGGCTGC 3468 Query 626471 ACTGTCTACGTCACTCTCTTTCCATGTTGCGAATGTACCAAGGCCATCATCCAG 626524 ||||| ||| || |||||||| ||| || |||||| ||| ||||| Sbjct 3469 CGCATCTACACCACCCTATTTCCATGCAACGAGTGCACCAAGATGATCGTCCAG 3522 >seq2901 Length=33178 Score = 109 bits (120), Expect = 2e-18 Identities = 148/198 (75%), Gaps = 10/198 (5%) Strand=Plus/Plus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 |||||||| |||| || ||||||||| || ||| || | |||||||| | || |||||| Sbjct 23712 CTCGAGCAGCATGCCGATGGTCATGCGGGAGGGGAAGCCGTGCGGGTTGAAGAGGATGTC 23771 Query 449047 GGGCGTCTCGCC-GGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGC---CGT 449102 |||| | | ||| || | |||||||||||| ||||| | | ||| |||| Sbjct 23772 GGGC-TGTAGCCCGGATTCTGTGAAGGGCATGTTCTCGGCG--GGCCA-GAGGCGAGACA 23827 Query 449103 TGACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTC-CCCCTGCTCGGGCTTGCGTGTG 449161 |||||||||| |||||||| |||||| ||||||||| ||| | ||||| ||||| || Sbjct 23828 TGACGCCCTTTTGGCCGTGCCGGCTGGCGAACTTGTCGCCCGGGATCGGG-TTGCGGTTG 23886 Query 449162 AAGCGCAGCACGATCTTG 449179 | |||||| |||| || Sbjct 23887 ATACGCAGCTTGATCGTG 23904 >seq2180 Length=33922 Score = 93.3 bits (102), Expect = 2e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 449005 GGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGGCGTCTCGCCGGCCGC 449064 |||||||||||| ||| || | |||||||||||||||||||| || | |||| | Sbjct 12169 GGTCATGCGCGAGGGGAAGCCGTGCGGGTTCATGATGATGTCCGGGCACACGCCCATGTC 12228 Query 449065 GTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGGCG 449124 ||||||||| |||||| | || | | ||| |||||||||| ||||||||||| Sbjct 12229 AGTGAAGGGCAGGTCCTCCTGCGGCACGATTCGACCGATGACGCCCTTTTGGCCGTGGCG 12288 Query 449125 GCTGCAGAACTTGTCCCCCTGCTCGGGCTTGCGTGTGAAGCGCAGCACGATCTTGA 449180 |||||||||| || |||| ||| | || |||||| |||||||| Sbjct 12289 CGACGAGAACTTGTCGCCTAGCTCTGGCCGTCTCGTTGAGCGCACGCGGATCTTGA 12344 >seq1077 Length=21007 Score = 93.3 bits (102), Expect = 2e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 449005 GGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGGCGTCTCGCCGGCCGC 449064 |||||||||||| ||| || | |||||||||||||||||||| || | |||| | Sbjct 19645 GGTCATGCGCGAGGGGAAGCCGTGCGGGTTCATGATGATGTCCGGGCACACGCCCATGTC 19704 Query 449065 GTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGGCG 449124 ||||||||| |||||| | || | | ||| |||||||||| ||||||||||| Sbjct 19705 AGTGAAGGGCAGGTCCTCCTGCGGCACGATTCGACCGATGACGCCCTTTTGGCCGTGGCG 19764 Query 449125 GCTGCAGAACTTGTCCCCCTGCTCGGGCTTGCGTGTGAAGCGCAGCACGATCTTGA 449180 |||||||||| || |||| ||| | || |||||| |||||||| Sbjct 19765 CGACGAGAACTTGTCGCCTAGCTCTGGCCGTCTCGTTGAGCGCACGCGGATCTTGA 19820 >seq1029 Length=21525 Score = 86.0 bits (94), Expect = 3e-11 Identities = 89/113 (79%), Gaps = 8/113 (7%) Strand=Plus/Minus Query 222432 CGGCGTGGCCTACCTCCACTCGCGCACCCCGTCCATCATCCACCGCGACCTCAAGTC-CA 222490 |||| ||| ||| || ||||||| | | || |||||||||||||| || |||||||| || Sbjct 10753 CGGCATGGGCTATCTGCACTCGCTCTCTCCCTCCATCATCCACCGTGATCTCAAGTCACA 10694 Query 222491 GCAACCTGCTCGTGGGC---GACTCCCTGTCGATGAAGGTGGCCGACTTTGGG 222540 | ||||||||||||| | |||| | ||| | |||| |||||||||||| Sbjct 10693 G-AACCTGCTCGTGGCCCCGGACTTC---TCGGTCCAGGTCGCCGACTTTGGG 10645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084645840166776