Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq3345 859 0.0 >seq3345 Length=67807 Score = 859 bits (952), Expect = 0.0 Identities = 799/1010 (79%), Gaps = 3/1010 (0%) Strand=Plus/Minus Query 159789 CTTCGTGGGAATCATTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTT 159848 |||| ||||| |||||||| ||| | ||||| || | ||| | || || | |||| Sbjct 46429 CTTC-TGGGAGCAATTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTT 46371 Query 159849 GGTTCGGCGTCCTGATGATCCCAACTCTGTTGGCAGCAACTATCTGCTT-CATCGTCGCC 159907 ||||||| || ||| |||| ||||| | |||| | | || |||| | | | || Sbjct 46370 GGTTCGGTTGTCTAATGTTCCCTACTCTACTTACAGCTATT-TCAGCTTACGTTATTGCT 46312 Query 159908 TTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTC 159967 || ||||| || || || || || |||||||| |||||||| || || |||||||| || Sbjct 46311 TTTATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTA 46252 Query 159968 ATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTT 160027 | ||||| |||||||||||||||||||| || ||||| ||| ||||| || ||| || Sbjct 46251 CTTTACGGAAACAACATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTT 46192 Query 160028 CACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCT 160087 |||||||| || || |||||||| || || |||| |||||||| || ||||||||| || Sbjct 46191 CACTTCTACCCAATCTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACT 46132 Query 160088 TTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGG 160147 | |||||| || || ||||||||| | || || | | ||| || || |||||||||||| Sbjct 46131 TACCAACTAGTTGTTTTCCACTTCTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGG 46072 Query 160148 GAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTC 160207 || || ||||||||||| ||||||||||| |||||||||||||| | ||| |||||||| Sbjct 46071 GAGCTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTA 46012 Query 160208 GCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCT 160267 ||||| || ||||| |||||| | ||||||| ||||||| ||||||||||| |||| | Sbjct 46011 GCTGCAGCATCTGCAGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGT 45952 Query 160268 ATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAAT 160327 |||||||| ||||||||||||||||| |||| ||||||||||||||||| || ||||| Sbjct 45951 ATGCCTCTAGGTATCTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAAC 45892 Query 160328 ATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTC 160387 ||||||||||| || ||||||||||| ||||||||||| ||||||||||| ||||| ||| Sbjct 45891 ATCCTTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTC 45832 Query 160388 TCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAG 160447 || |||||||| || ||||| || ||||| ||| || | || || || || | || Sbjct 45831 TCAGCTATGCACGGTTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAA 45772 Query 160448 TCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCA 160507 || ||||| |||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 45771 TCTGCTAACTACGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCT 45712 Query 160508 CATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTG 160567 || || ||||| |||||| | |||||||||| || || || ||||||||||| | || Sbjct 45711 CACGGTTACTTAGGTCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTT 45652 Query 160568 CACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCT 160627 |||||| |||| | ||||||||| || ||||| |||||||| || | | ||||| || Sbjct 45651 CACTTCGTCCTAGGTGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGTAGCT 45592 Query 160628 ACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGA 160687 || ||||||||||| || || |||||||||||||||||||| | | || ||||| Sbjct 45591 ACTATGGCATTCAACCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGATTCACAAGGT 45532 Query 160688 CAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATG 160747 | || | ||||||||||| ||| | |||||||| | || || |||||||| ||| Sbjct 45531 CGTGTAATCAACACTTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATG 45472 Query 160748 CACGAGCGTAACGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAGTC 160797 ||||||||||||||||||||||||||||| || || ||||||| |||||| Sbjct 45471 CACGAGCGTAACGCTCACAACTTCCCTCTAGATCTAGCTGCTGGTGAGTC 45422 Score = 623 bits (690), Expect = 1e-173 Identities = 748/1014 (74%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 161515 TTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 161574 |||||| | |||| |||||||| || || || ||||||||||| ||||| ||||||||| Sbjct 59793 TTCGATCTTATTGATGACTGGCTAAAGCGTGACCGTTTCGTTTTCGTTGGATGGTCTGGA 59852 Query 161575 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTC 161634 |||||||| || || ||| | || ||| | || |||||||| ||||| | |||||| Sbjct 59853 CTTCTTCTATTCCCATGTGCATTCCTAGCTGTAGGTGGTTGGCTAACTGGTATTACTTTC 59912 Query 161635 GCTACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAATTTTCTT 161694 | || ||||| || || || || || ||||| | || || || || || || Sbjct 59913 GTAACATCTTGGTACACTCACGGTCTAGCAAGTTCGTTCCTAGAAGGATGTAACTTCCTA 59972 Query 161695 ACAGCGGCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGT 161754 || || || || ||||| ||| || ||||||||| || || || ||| ||||||| Sbjct 59973 ACTGCTGCTGTATCTACTCCTGCTAACAGTATGGGTCACTCACTACTACTTATCTGGGGA 60032 Query 161755 CCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTG 161814 ||||| || ||||| || || | ||| ||||| |||| || || ||| |||| | Sbjct 60033 CCTGAAGCACAAGGTGACATCACTCGTTGGTTCCAAATTGGTGGTCTTTGGGCTTTTATT 60092 Query 161815 GCGCTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTTGCTCGT 161874 || || ||||| | || | | | ||||| ||| ||| | |||||||| | |||||| Sbjct 60093 GCACTACACGGTTCGTTTGGTGTAATTGGTTTCTGTCTTAGACAGTTTGAGATCGCTCGT 60152 Query 161875 CTTATCGGTATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTC 161934 | | ||||| ||||||||||| || || |||||||||||||| || || || || || Sbjct 60153 TTAGTAGGTATTCGTCCTTACAACGCAATCGCTTTCTCTGGTCCAATCGCCGTATTCGTT 60212 Query 161935 AGCGTCTTTCTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGG 161994 | || || || | || ||| | || || | |||||||| || ||| ||||| Sbjct 60213 ACAGTTTTCCTAGTTTACCCTTTAGGTCAAGCAAGTTGGTTCTTTGCACCAAGTTTTGGT 60272 Query 161995 GTTGCCGCTATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAATTGGACGCTTAAT 162054 || || || |||||| | ||| | ||||||||||||||||||||||| ||||| ||||| Sbjct 60273 GTAGCGGCAATTTTCCGTTTCCTTCTTTTCCTACAAGGTTTCCACAACTGGACTCTTAAC 60332 Query 162055 CCGTTCCACATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCAC 162114 || |||||||||||||| || || |||||| | |||||||| || || | ||||||||| Sbjct 60333 CCATTCCACATGATGGGCGTAGCTGGTATCCTTGGTGGTGCCTTACTATGTGCTATTCAT 60392 Query 162115 GGTGTGACTGTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAATACTTTCAAGGCT 162174 |||| |||||| || ||||| || | | |||||||||| || || |||||| || Sbjct 60393 GGTGCGACTGTAGAGAACACTCTTTTCGAAGATGGTGATGCTGCGAACACTTTCCGTGC- 60451 Query 162175 TTTGACT-CTACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCGTTTCTGGTC 162233 || ||| | || ||| || ||||||||||| ||||||||||| |||||||||||||| Sbjct 60452 ATTCACTCCAACACAATCAGAAGAGACTTACTCAATGGTTACTGCAAACCGTTTCTGGTC 60511 Query 162234 ACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTATGCTCTTCGT 162293 ||||| || ||| |||| || ||| ||||||||||| || ||||| ||||| ||||| Sbjct 60512 TCAGATTTTTGGTGTTGCATTCTCTAACAAGCGTTGGTTACACTTCTTCATGCTTTTCGT 60571 Query 162294 TCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTTAATCTTCG 162353 || || ||| | ||||||||| | ||||||||| | || | || || || || || Sbjct 60572 ACCAGTAGCTGGTATGTGGACAAGTGCGATCGGTATTGTAGGTTTAGCACTAAACCTGCG 60631 Query 162354 TGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTT 162413 ||| ||||| || || || || ||| || | || || || || |||||||| ||||| || Sbjct 60632 TGCATACGATTTCGTTTCGCAAGAGCTTAGAGCCGCAGAAGACCCTGAATTCGAAACATT 60691 Query 162414 CTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCACCAGTTGATCA 162473 |||||| || || | ||| | ||||||||| | ||||| ||| |||| || ||||| Sbjct 60692 CTACACGAAAAACAACCTTCTAAATGAAGGTATCCGTGCGTGGATGGCTGCACAAGATCA 60751 Query 162474 ACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCCTAGAGGTAACGCACT 162527 ||| ||||| ||||| | ||||||||||| || || || | || ||||| || Sbjct 60752 ACCTCATGAAAACTTCATCTTCCCTGAGGAGGTACTACCACGTGGAAACGCCCT 60805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551352483813600