Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq3345 845 0.0 >seq3345 Length=67807 Score = 845 bits (936), Expect = 0.0 Identities = 794/1006 (79%), Gaps = 4/1006 (0%) Strand=Plus/Minus Query 188842 TGGGAATCATTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTC 188901 ||||| |||||||| |||| |||| || ||| | ||| | || || | ||||||||| Sbjct 46425 TGGGAGCAATTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTTGGTTC 46366 Query 188902 GGTGTCCTGATGATCCCTACGCTTCTCGCTGCAACCATCTGCTT-CATCGTCGCCTTTGT 188960 ||| || ||| ||||||| || || | || | || |||| | | | || ||| | Sbjct 46365 GGTTGTCTAATGTTCCCTACTCTACTTACAGCTATT-TCAGCTTACGTTATTGCTTTTAT 46307 Query 188961 CGCTGCACCCCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTA 189020 ||| ||||| || ||||| || ||||| ||||| || || || |||||||| || | || Sbjct 46306 CGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTACTTTA 46247 Query 189021 TGGAAACAACATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTT 189080 |||||||||||||||||||||||||| || || || ||||| || ||| ||||||| Sbjct 46246 CGGAAACAACATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTTCACTT 46187 Query 189081 CTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCA 189140 |||||| ||||||||||| || ||| ||||||||||||| |||||||||||| ||| ||| Sbjct 46186 CTACCCAATCTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACTTACCA 46127 Query 189141 ACTGGTAGTCTTCCACTTCCTCATCGGCATCTACGCCTACATGGGTCGTGAGTGGGAACT 189200 ||| || || ||||||||| |||| || | | || ||||| |||||||||||||| || Sbjct 46126 ACTAGTTGTTTTCCACTTCTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGGGAGCT 46067 Query 189201 CTCTTACCGTCTCGGTATGCGTCCTTGGATCTGCATTGCTTACTCTGCACCTGTTGCAGC 189260 ||||||||||| ||||||||||| |||||||| |||||| ||| || || || || || Sbjct 46066 TTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTAGCTGC 46007 Query 189261 AGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCC 189320 |||||| ||||| || | |||| || | ||||||||||||||||| || | ||||| Sbjct 46006 AGCATCTGCAGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTATGCC 45947 Query 189321 CTTGGGTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCT 189380 | |||||| ||| || ||||||| ||||||||| |||||||| |||||||||||||| Sbjct 45946 TCTAGGTATCTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCCT 45887 Query 189381 GATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGC 189440 |||||||| ||||||||||| || || || ||||| ||||||||||| || ||||| || Sbjct 45886 TATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTCTCAGC 45827 Query 189441 AATGCATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCA 189500 ||||| ||||| || || || || || || | |||||||| ||||| | ||| || Sbjct 45826 TATGCACGGTTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAATCTGC 45767 Query 189501 GAACTATGGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGG 189560 ||||| ||||||||||| || ||||||||||| || |||||||||||||| ||||| || Sbjct 45766 TAACTACGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCTCACGG 45707 Query 189561 ATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTT 189620 || || |||||||| |||||||||| || || ||||||||||| ||| |||||||||| Sbjct 45706 TTACTTAGGTCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTTCACTT 45647 Query 189621 CTTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGC-ACCA 189679 | |||| | ||| |||||||| || ||||||||||| || | | || || ||| || | Sbjct 45646 CGTCCTAGGTGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGT-AGCTACTA 45588 Query 189680 TGGCATTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTG 189739 ||||||||||||| || || ||||||||||| || || || | ||| |||||||||| Sbjct 45587 TGGCATTCAACCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGATTCACAAGGTCGTG 45528 Query 189740 TTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATG 189799 | | ||||| ||||| ||| |||| |||||| | || ||||||||||| ||||| | Sbjct 45527 TAATCAACACTTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATGCACG 45468 Query 189800 AGCGTAACGCTCACAACTTCCCTCTTGATCTGGCAGCAGCAGAGTC 189845 ||||||||||||||||||||||||| ||||| || || | ||||| Sbjct 45467 AGCGTAACGCTCACAACTTCCCTCTAGATCTAGCTGCTGGTGAGTC 45422 Score = 596 bits (660), Expect = 2e-165 Identities = 736/1004 (73%), Gaps = 2/1004 (0%) Strand=Plus/Plus Query 189997 TTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTT 190056 ||||||||||||| || || || || || || || || || ||||||||| | ||||| | Sbjct 59803 TTGATGACTGGCTAAAGCGTGACCGTTTCGTTTTCGTTGGATGGTCTGGACTTCTTCTAT 59862 Query 190057 TTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGCTACAAGCT 190116 | || ||| | || || | ||||| ||||| ||||| | || || | ||| | Sbjct 59863 TCCCATGTGCATTCCTAGCTGTAGGTGGTTGGCTAACTGGTATTACTTTCGTAACATCTT 59922 Query 190117 GGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTTTCTTACAGCGGCTG 190176 ||||||| ||||| || |||||| | ||| || || ||| || || || || |||| Sbjct 59923 GGTACACTCACGGTCTAGCAAGTTCGTTCCTAGAAGGATGTAACTTCCTAACTGCTGCTG 59982 Query 190177 TGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATCTC 190236 | || || |||||| | ||||||||| || || || || | ||||| |||||| | | Sbjct 59983 TATCTACTCCTGCTAACAGTATGGGTCACTCACTACTACTTATCTGGGGACCTGAAGCAC 60042 Query 190237 AAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACG 190296 |||| || || | ||| ||||| |||| || || ||||||||| | || || |||| Sbjct 60043 AAGGTGACATCACTCGTTGGTTCCAAATTGGTGGTCTTTGGGCTTTTATTGCACTACACG 60102 Query 190297 GGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACGTCTCATCGGTA 190356 | | || | | ||||||| ||| ||| | |||||||| | || ||| | | |||| Sbjct 60103 GTTCGTTTGGTGTAATTGGTTTCTGTCTTAGACAGTTTGAGATCGCTCGTTTAGTAGGTA 60162 Query 190357 TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTC 190416 | ||||||||||| || || || ||||||||||| ||||| || || |||| || || | Sbjct 60163 TTCGTCCTTACAACGCAATCGCTTTCTCTGGTCCAATCGCCGTATTCGTTACAGTTTTCC 60222 Query 190417 TCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCAGCGA 190476 | | |||||| | |||||| | ||||||||||| || ||| || ||||| || || | Sbjct 60223 TAGTTTACCCTTTAGGTCAAGCAAGTTGGTTCTTTGCACCAAGTTTTGGTGTAGCGGCAA 60282 Query 190477 TCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCCACA 190536 | ||||| ||||| || ||| | || || ||||| |||||||| || ||||| ||||||| Sbjct 60283 TTTTCCGTTTCCTTCTTTTCCTACAAGGTTTCCACAACTGGACTCTTAACCCATTCCACA 60342 Query 190537 TGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGGTGTGACTG 190596 ||||||| || || |||||||| || || || |||| | || || ||||||| ||||| Sbjct 60343 TGATGGGCGTAGCTGGTATCCTTGGTGGTGCCTTACTATGTGCTATTCATGGTGCGACTG 60402 Query 190597 TAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGCATTCGACT-CT 190655 ||||||| ||| | | ||||||||||| || ||||| || |||||| ||| | Sbjct 60403 TAGAGAACACTCTTTTCGAAGATGGTGATGCTGCGAACACTTTCCGTGCATTC-ACTCCA 60461 Query 190656 ACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTT 190715 |||||| |||||||| || || ||||| ||||| ||||||||||||||||| || ||| Sbjct 60462 ACACAATCAGAAGAGACTTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATTTTT 60521 Query 190716 GGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATG 190775 |||||||| ||| ||| ||| | ||||| || ||||| ||||| || || || || Sbjct 60522 GGTGTTGCATTCTCTAACAAGCGTTGGTTACACTTCTTCATGCTTTTCGTACCAGTAGCT 60581 Query 190776 GGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGAC 190835 ||| ||||||| | | ||||||||| | ||| | || || ||||| ||||| || || Sbjct 60582 GGTATGTGGACAAGTGCGATCGGTATTGTAGGTTTAGCACTAAACCTGCGTGCATACGAT 60641 Query 190836 TTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTTTACACAAAA 190895 || || || |||||| | ||||| |||||||| || || ||||| || || ||||| ||| Sbjct 60642 TTCGTTTCGCAAGAGCTTAGAGCCGCAGAAGACCCTGAATTCGAAACATTCTACACGAAA 60701 Query 190896 AATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATCAACCCCATGAG 190955 || | ||| | ||||||||| | ||| | ||| |||| | |||||||| ||||| Sbjct 60702 AACAACCTTCTAAATGAAGGTATCCGTGCGTGGATGGCTGCACAAGATCAACCTCATGAA 60761 Query 190956 AATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 || || | || || || || ||| | ||| | || ||||| || Sbjct 60762 AACTTCATCTTCCCTGAGGAGGTACTACCACGTGGAAACGCCCT 60805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634052956488000