Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq3345 872 0.0 >seq3345 Length=67807 Score = 872 bits (966), Expect = 0.0 Identities = 800/1006 (80%), Gaps = 4/1006 (0%) Strand=Plus/Minus Query 160563 TGGGAACAATTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTC 160622 ||||| |||||||||| ||| | ||||| || | || | || ||| | ||||||||| Sbjct 46425 TGGGAGCAATTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTTGGTTC 46366 Query 160623 GGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACCGTCTGCTTTA-TTACTGCGTTCGT 160681 ||| || ||| |||| ||||| | |||| | || |||| ||| ||| || | Sbjct 46365 GGTTGTCTAATGTTCCCTACTCTACTTACAGCTATT-TCAGCTTACGTTATTGCTTTTAT 46307 Query 160682 TGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTA 160741 || || || || || || ||||| ||||||||||| || ||||||||||| || | || Sbjct 46306 CGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTACTTTA 46247 Query 160742 TGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTT 160801 ||||||||||||||||||||||| || ||||| ||| ||||| || ||| ||||||| Sbjct 46246 CGGAAACAACATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTTCACTT 46187 Query 160802 CTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCA 160861 |||||| || ||||||||||| || | ||||| ||||| ||||| |||||| ||||||| Sbjct 46186 CTACCCAATCTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACTTACCA 46127 Query 160862 ACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTGCT-ACATGGGTCGCGAGTGGGAAC 160920 ||| || || || |||||| | || || | | |||| |||| ||||| |||||||| | Sbjct 46126 ACTAGTTGTTTTCCACTTCTTCATTGGTGTATG-TGCTTACATCGGTCGTGAGTGGGAGC 46068 Query 160921 TTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGCGTTGCATATTCTGCACCTGTTGCTG 160980 |||| ||||| || || ||||| || |||||||| ||||| | || || || || |||| Sbjct 46067 TTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTAGCTG 46008 Query 160981 CTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGC 161040 | || |||||||||| | |||| || ||||||||||||||||||| |||||||||| Sbjct 46007 CAGCATCTGCAGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTATGC 45948 Query 161041 CCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCC 161100 | || |||||||||||||| ||||||||||||||||| ||||| || || |||||||||| Sbjct 45947 CTCTAGGTATCTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCC 45888 Query 161101 TGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCG 161160 | |||||||| ||||||||| | |||||||||||||| |||||||||||||| ||||| | Sbjct 45887 TTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTCTCAG 45828 Query 161161 CAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAGAACGAGTCCC 161220 | ||||| ||||| || || ||||| || || | |||||||| ||||||||||| || Sbjct 45827 CTATGCACGGTTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAATCTG 45768 Query 161221 AGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATG 161280 ||||| ||||||||||| ||||||||||||||||| ||||||||||| || ||||| | Sbjct 45767 CTAACTACGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCTCACG 45708 Query 161281 GTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACT 161340 ||||||| ||||| || |||||||||||||||| ||||||||||| ||| | | |||| Sbjct 45707 GTTACTTAGGTCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTTCACT 45648 Query 161341 TCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCA 161400 || |||| | || ||||| || || ||||||||||| || | | ||||| | || | Sbjct 45647 TCGTCCTAGGTGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGTAGCTACTA 45588 Query 161401 TGGCATTCAACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAG 161460 ||||||||||||| ||||| ||||||||||||||||| | | ||| || || | Sbjct 45587 TGGCATTCAACCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGATTCACAAGGTCGTG 45528 Query 161461 TCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACG 161520 | | ||||| ||||||||| |||| || ||| | ||||| ||||||||||| ||||||| Sbjct 45527 TAATCAACACTTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATGCACG 45468 Query 161521 AGCGTAATGCTCACAACTTCCCTCTGGATCTCGCTGCTGCTGAGTC 161566 ||||||| ||||||||||||||||| ||||| ||||||| |||||| Sbjct 45467 AGCGTAACGCTCACAACTTCCCTCTAGATCTAGCTGCTGGTGAGTC 45422 Score = 661 bits (732), Expect = 0.0 Identities = 760/1019 (75%), Gaps = 4/1019 (0%) Strand=Plus/Plus Query 163887 TTCGATGTCCTGGACGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 163946 |||||| | | || |||||||| || || || || || || || || || ||||||||| Sbjct 59793 TTCGATCTTATTGATGACTGGCTAAAGCGTGACCGTTTCGTTTTCGTTGGATGGTCTGGA 59852 Query 163947 TTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGTACAACGTTT 164006 | ||||| || || ||| | || || | ||||| ||||| ||||||| || || Sbjct 59853 CTTCTTCTATTCCCATGTGCATTCCTAGCTGTAGGTGGTTGGCTAACTGGTATTACTTTC 59912 Query 164007 GTTACCAGTTGGTACACCCACGGTCTCGC--GTCTAGTTACCTTGAGGGTGCTAATTTCC 164064 || || ||||||||| |||||||| || || | ||| ||| || || ||| |||| Sbjct 59913 GTAACATCTTGGTACACTCACGGTCTAGCAAGT-TCGTT-CCTAGAAGGATGTAACTTCC 59970 Query 164065 TTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGG 164124 | || || ||||| || || |||||| | ||||||||| || || || || | |||| Sbjct 59971 TAACTGCTGCTGTATCTACTCCTGCTAACAGTATGGGTCACTCACTACTACTTATCTGGG 60030 Query 164125 GTCCTGAGTCTCAGGGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTTTG 164184 | ||||| | || || ||| ||| | | |||| |||| |||| || || ||||||||| Sbjct 60031 GACCTGAAGCACAAGGTGACATCACTCGTTGGTTCCAAATTGGTGGTCTTTGGGCTTTTA 60090 Query 164185 TGGCGTTCCACGGATCTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGAAATTGCAC 164244 | || | ||||| || || | | | || |||||| ||| | |||||||| || || | Sbjct 60091 TTGCACTACACGGTTCGTTTGGTGTAATTGGTTTCTGTCTTAGACAGTTTGAGATCGCTC 60150 Query 164245 GTCTTGTAGGTATCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTG 164304 || | |||||||| ||||| ||||| || || || ||||||||||| || || || || | Sbjct 60151 GTTTAGTAGGTATTCGTCCTTACAACGCAATCGCTTTCTCTGGTCCAATCGCCGTATTCG 60210 Query 164305 TCAGCGTTTTCCTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTG 164364 | | |||||||| | |||||| | || ||| | |||||||||||||| || |||| Sbjct 60211 TTACAGTTTTCCTAGTTTACCCTTTAGGTCAAGCAAGTTGGTTCTTTGCACCAAGTTTTG 60270 Query 164365 GGGTCGCGGCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCA 164424 | || ||||| || ||| | ||||| | ||||| ||||||||||| |||||||| || | Sbjct 60271 GTGTAGCGGCAATTTTCCGTTTCCTTCTTTTCCTACAAGGTTTCCACAACTGGACTCTTA 60330 Query 164425 ACCCCTTCCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTC 164484 |||| ||||| |||||||| || || || |||||||||||||| | || |||||||||| Sbjct 60331 ACCCATTCCACATGATGGGCGTAGCTGGTATCCTTGGTGGTGCCTTACTATGTGCTATTC 60390 Query 164485 ATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAAGG 164544 ||||||| || |||||||| ||| | || ||||||||||| | || |||||| | Sbjct 60391 ATGGTGCGACTGTAGAGAACACTCTTTTCGAAGATGGTGATGCTGCGAACACTTTCCGTG 60450 Query 164545 CATTCGAGCCTACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGT 164604 ||||| || || ||| |||||||||||||| ||||| ||||| ||||| ||||||| Sbjct 60451 CATTCACTCCAACACAATCAGAAGAGACTTACTCAATGGTTACTGCAAACCGTTTCTGGT 60510 Query 164605 CTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTG 164664 |||||||||||||| |||| ||| || ||||||||||| |||||||| ||||| || | Sbjct 60511 CTCAGATTTTTGGTGTTGCATTCTCTAACAAGCGTTGGTTACACTTCTTCATGCTTTTCG 60570 Query 164665 TTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCTTC 164724 | || || || | ||||||||| | || ||||| | ||| | ||||| || || | Sbjct 60571 TACCAGTAGCTGGTATGTGGACAAGTGCGATCGGTATTGTAGGTTTAGCACTAAACCTGC 60630 Query 164725 GTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGACGT 164784 |||| || ||||| || || || ||| ||||||| ||||| || |||||||| || || | Sbjct 60631 GTGCATACGATTTCGTTTCGCAAGAGCTTAGAGCCGCAGAAGACCCTGAATTCGAAACAT 60690 Query 164785 TCTATACGAAGAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACC 164844 |||| ||||| |||| ||| || |||||||| ||||||| ||||||||| || ||| | Sbjct 60691 TCTACACGAAAAACAACCTTCTAAATGAAGGTATCCGTGCGTGGATGGCTGCACAAGATC 60750 Query 164845 AGCCACACGAATCGTTTGTATTTCCAGAGGAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 | || || ||| || | || || ||||| || || || | || ||||| || ||| Sbjct 60751 AACCTCATGAAAACTTCATCTTCCCTGAGGAGGTACTACCACGTGGAAACGCCCTTTAA 60809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559304144660800