Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq6123 219 6e-55 seq6212 93.3 6e-17 seq3794 73.4 6e-11 >seq6123 Length=898 Score = 219 bits (242), Expect = 6e-55 Identities = 192/235 (82%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| |||| ||||||| ||| |||||||| ||| | Sbjct 652 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCT-GATGACTTGCGATTACTAGGTATT-C 595 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| |||| | | |||| ||| |||||| ||||| |||||| | || | ||||| Sbjct 594 CTCGTTAAAGATCGAAAATTCCAACGATCTAACCCCAGCACGATCGACGTTGAGGAGATT 535 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGA-----CTCGTTGAATACATCAGTGTAGCGCGC 174 ||| | |||||||||||||| | | |||||||||| ||||||||||||||| Sbjct 534 GCCCAGGCCTGTCGGCCAAGGACGAAAATCACGCTCGTTGAATCGATCAGTGTAGCGCGC 475 Query 175 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCG 229 |||||||||||| ||||||||||||||||||||||| ||||||||||| |||| Sbjct 474 GTGCGGCCCAGATTATCTAAGGGCATCACAGACCTGTATTTGCCTCAAACCTCCG 420 >seq6212 Length=42043 Score = 93.3 bits (102), Expect = 6e-17 Identities = 111/150 (74%), Gaps = 12/150 (8%) Strand=Plus/Minus Query 86 GATCTATCCCCATCACGATGAAATTTCAA-AGATTACCCGGACCTGTCGGCCAAGGTGAT 144 ||| || ||||| |||||| || | ||||| ||| | ||||||||||||| Sbjct 25403 GATATAACCCCAGCACGATCGCCGTTGAGGAGATTGCCCAGGTCTGTCGGCCAAGGACGA 25344 Query 145 AGA-----CTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCA 199 | | |||||||||| ||||||| ||||||||||||||||||| ||||||||||| Sbjct 25343 AAATCACGCTCGTTGAATCGATCAGTGCAGCGCGCGTGCGGCCCAGATTATCTAAGGGCA 25284 Query 200 TCACAGACCTGTTATTGCCTCAAACTTCCG 229 ||||| | ||||||||||| |||| Sbjct 25283 TCACA------TATTTGCCTCAAACCTCCG 25260 >seq3794 Length=6276 Score = 73.4 bits (80), Expect = 6e-11 Identities = 68/84 (81%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||| ||| ||| |||||||| ||| |||||||| | ||| Sbjct 4827 GTACAAAGGGCAGGGACATAATCAGCGCAAGC-TGATGACTTGCGATTACTAGGTA-TTC 4884 Query 61 CTCGTTGAAGACCAACAATTGCAA 84 ||||| | || | | |||| ||| Sbjct 4885 TTCGTTAACGATCGAAAATTCCAA 4908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751914568805