Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq5229 194 7e-47 seq6594 181 4e-43 seq5876 145 3e-32 seq125 143 1e-31 seq97 136 2e-29 seq9364 122 4e-25 seq10488 113 2e-22 seq10844 80.6 1e-12 seq5553 77.0 1e-11 >seq5229 Length=1537 Score = 194 bits (214), Expect = 7e-47 Identities = 154/184 (84%), Gaps = 1/184 (1%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| ||||||||||||| ||||||||||||||| || |||| |||||| ||| ||||||| Sbjct 806 TTCAACGAGTCGAGTTGCTTGGGAATGCAGCTCAAATTGGGTGGTAAACTTCATCTAAAG 747 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||| ||| |||||||||||||| ||||||| |||| ||||||||||||| ||| Sbjct 746 CTAAATACCGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACT 687 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACT 213 ||| |||||||||| ||||| || |||||||||| ||||||||| | | |||| || Sbjct 686 TTGAAAAGAGAGTT-AAAAGTACCTGAAATTGTTAGCAGGGAAGCGAAGGAACCCAGTCT 628 Query 214 TGCC 217 ||| Sbjct 627 AGCC 624 Score = 136 bits (150), Expect = 2e-29 Identities = 191/270 (71%), Gaps = 21/270 (8%) Strand=Plus/Minus Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 ||| |||||| ||||| | | || ||||||||| |||||||||||||||||||||| Sbjct 275 GATACTGGCGAAATGGGTTTTTTCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACGA 216 Query 442 CTATGCGAGTGTTTGGGTGTCAAACCCGT-GCGCGTAATGAAAGTGAACGGAGGTGGGAA 500 ||||||||| | ||||| || || | ||||||| |||||| || | | || || Sbjct 215 ACATGCGAGTGGTAAGGTGTAGAAACCTTAGCGCGTACTGAAAGGAAAGGCAAGTTTGAC 156 Query 501 CCCGTGAGGGT-------------------GCACCATCGACCGATCCTGATGT-CTTCGG 540 ||||| | ||| ||| ||| | || |||| Sbjct 155 TTGCTGAGGATCGAGGGCTGTCAAAAGCCTGCAGGTTCGGCCGGCGACAAGGTTCTTCCA 96 Query 541 ATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATA 600 | | |||| | |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 95 AGTTGTCTGAGCAGGAGCATGTTTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATA 36 Query 601 GGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 || ||||||||||||||||||||||||||| Sbjct 35 GGATGAAGCCAGAGGAAACTCTGGTGGAGG 6 >seq6594 Length=28368 Score = 181 bits (200), Expect = 4e-43 Identities = 147/177 (83%), Gaps = 1/177 (1%) Strand=Plus/Minus Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100 |||||||||| ||||||||||||||| || |||| |||||| ||| |||||||||||||| Sbjct 6487 AGTCGAGTTGCTTGGGAATGCAGCTCAAATTGGGTGGTAAACTTCATCTAAAGCTAAATA 6428 Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAA 160 ||| |||||||||||||| ||||||| ||| ||||||||||||| |||||| ||| Sbjct 6427 CCGGCGAGAGACCGATAGCGAACAAGTACCCTGAGGGAAAGATGAAAAGAACTTTGAAAA 6368 Query 161 GAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCC 217 ||||||| ||||| || |||||||||| ||||||||| | | |||| || ||| Sbjct 6367 GAGAGTT-AAAAGTACCTGAAATTGTTAGCAGGGAAGCGAAGGAACCCAGTCTAGCC 6312 >seq5876 Length=3130 Score = 145 bits (160), Expect = 3e-32 Identities = 142/184 (77%), Gaps = 12/184 (7%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| ||||||||||||| ||||||||||||||| || |||| |||||| ||| ||||||| Sbjct 1584 TTCAACGAGTCGAGTTGCTTGGGAATGCAGCTCAAATTGGGTGGTAAACTTCATCTAAAG 1643 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||| || |||| ||||||| |||| ||||||||||||| ||| Sbjct 1644 CTAAATACCGGTGAGAG-----------ACAAGTACCGTGAGGGAAAGATGAAAAGAACT 1692 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACT 213 ||| |||||||||| |||| || |||||||||| ||||||||| | | |||| || Sbjct 1693 TTGAAAAGAGAGTT-TAAAGTACCTGAAATTGTTATCAGGGAAGCGAAGGAACCCAGTCT 1751 Query 214 TGCC 217 ||| Sbjct 1752 AGCC 1755 >seq125 Length=18180 Score = 143 bits (158), Expect = 1e-31 Identities = 133/166 (80%), Gaps = 6/166 (4%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| || ||| |||||| ||| |||||||||| || ||| | |||| || |||||| Sbjct 4585 TTCAACTAGTTGAGTTGCTTG--AATGCAGCTCAAATGGGGTGATAAACTTTATCTAAAA 4642 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||| ||| |||||||||||||| |||||| |||| ||||||||||||| || Sbjct 4643 CTAAATACAGGCGAGAGACCGATAGCGAACAAGT---GTGAGGGAAAGATGAAAAGAGCT 4699 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||| |||||||||| ||||| || |||||||||| ||||||||| Sbjct 4700 TTGAAAAGAGAGTT-AAAAGTACCTGAAATTGTTAGCAGGGAAGCG 4744 >seq97 Length=814 Score = 136 bits (150), Expect = 2e-29 Identities = 95/108 (88%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 814 AAAGATGGTGAACTATGCCTGAATAGGATGAAGCCAGAGGAAACTCTGGTGGAGGTCCGA 755 Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | || ||| ||||||||||| | || ||||||||||||||||||| Sbjct 754 AAGCGTCCTGACGTGCAAATCGGTGCTCGAATTTGGGTATAGGGGCGA 707 >seq9364 Length=14027 Score = 122 bits (134), Expect = 4e-25 Identities = 93/109 (85%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 |||||||||||||| ||| |||||||||||||| ||||||| |||| |||||||||| Sbjct 8716 TCTAAAGCTAAATAACGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAA 8775 Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGA 195 ||| |||||| |||||||||| ||||| || |||||||||| ||||| Sbjct 8776 AAGAACTTTGAAAAGAGAGTT-AAAAGTACCTGAAATTGTTAGCAGGGA 8823 >seq10488 Length=9449 Score = 113 bits (124), Expect = 2e-22 Identities = 65/67 (97%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 9378 TGTTGGGACCCAAAAGATGGTGAACTATGCCTGAATAGGATGAAGCCAGAGGAAACTCTG 9437 Query 624 GTGGAGG 630 ||||||| Sbjct 9438 GTGGAGG 9444 >seq10844 Length=9332 Score = 80.6 bits (88), Expect = 1e-12 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 589 TATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCG 648 |||||||||||||| ||||||||||||||||||||||||||| || | || ||| || Sbjct 3968 TATGCCTGAATAGGATGAAGCCAGAGGAAACTCTGGTGGAGGTCCGAAAGCGTCCTGACG 4027 Query 649 TGCAAATCG 657 || |||||| Sbjct 4028 TGTAAATCG 4036 >seq5553 Length=17064 Score = 77.0 bits (84), Expect = 1e-11 Identities = 63/74 (85%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 546 TTTGAGTAAG-AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGT 604 |||| ||||| ||||| |||||||||| ||||||||||||| || |||||||||| | Sbjct 7535 TTTG-GTAAGGAGCATGTTTGTTGGGACCAGAAAGATGGTGAATAATACCTGAATAGGAT 7477 Query 605 GAAGCCAGAGGAAA 618 |||||| ||||||| Sbjct 7476 GAAGCCTGAGGAAA 7463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079748455850