Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq3864 95.1 1e-17 seq780 93.3 4e-17 >seq3864 Length=792 Score = 95.1 bits (104), Expect = 1e-17 Identities = 127/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 |||||||||||||||| | ||||||| ||||||||| || |||||| ||||| ||| Sbjct 472 GGTGGATGCCTAGGCTGTAAGAGGCGATGAAGGACGTACTAGACTGCGATAAGCTTTGGG 413 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGA 127 || | | | | |||||||| |||| |||||||||| |||||| ||| | || Sbjct 412 GAGCCGTCAAGAGGCATTGATCCAGAGATTTCCGAATGGGACAACCCAGCATA-GAGTGA 354 Query 128 TATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 | ||| | || ||| || ||| ||| ||| ||| |||||||||| |||| Sbjct 353 TCTAT-GTTACCCTA--CGGGGGGCTAACCTGGCGAAGTGAAACATCTCAGTA 304 >seq780 Length=916 Score = 93.3 bits (102), Expect = 4e-17 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| |||||||||||||||| || ||| ||| |||||||||| |||||||||||||| Sbjct 423 GGCATGCGGTGGATGCCTAGGCACTGAGAGCCGATGAAGGACGTGGTAAGCTGCGAAAAG 482 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 ||| ||| ||| | | ||||| ||| || ||||||||||| ||||| Sbjct 483 TCACGAGGAGCTGCAAGCAAGCTTTGATTCGTGAATGTCCGAATGGGGGAACCC 536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476745832987