Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq4481 163 4e-38 seq2859 120 4e-25 seq24 118 1e-24 >seq4481 Length=1247 Score = 163 bits (180), Expect = 4e-38 Identities = 180/240 (75%), Gaps = 10/240 (4%) Strand=Plus/Plus Query 9 TCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGT 68 |||| ||||||||||||||||| || |||||||| || | | || ||| ||||||| Sbjct 1 TCCAGCACCGGGCAGGCGTCAGCCCATATACATCATCTCTCGAT-TTAGCATAGACCTGT 59 Query 69 GTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCG 128 |||||| |||||||| |||| ||| ||||||||| || | ||||| | || | Sbjct 60 GTTTTTGTTAAACAGTTGCTTGGATCTGTTCTCTGCGGCCGGAATTAGCTCTAAACCTAT 119 Query 129 TTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAA 188 | | |||| |||||||| |||| ||||||| ||||||||||| |||||||| Sbjct 120 TCC---------GGCATCCCTTCTCGCGAACTTACGGGATCATTTTGCCGAGTTCCTTAA 170 Query 189 CCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | |||| | || |||||||||||||||||| ||||||||||||||| ||||| Sbjct 171 CGATAGTTTTCTCGCTCGCCTTAGTATTCTCTACTCTCCCACCTGTGTCGGTTCTCGGTA 230 >seq2859 Length=1125 Score = 120 bits (132), Expect = 4e-25 Identities = 184/255 (72%), Gaps = 12/255 (5%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||||| |||||||||||||||| || |||||||| ||||| ||| || ||| Sbjct 1077 TTAACCTTCCAGCACCGGGCAGGCGTCACACCCTATACATCCACTTA-CGTGTTAGCAGA 1019 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGC--TC 119 | |||||||||| ||||||||||| || || ||| ||| ||||| || Sbjct 1018 GTGCTGTGTTTTTGGTAAACAGTCGGGAGGGACTCTTTGTTGCAACC-TTTCCAGCTTTC 960 Query 120 AACACGTCGTTC-----ACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTT 174 | | || || ||| | ||||| |||| | |||||| ||||| || ||||| Sbjct 959 GAGA-GTAAATCTCTATACCGAAGGAGGCACACCTTATACCGAAGATACGGTGCTATTTT 901 Query 175 GCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGA-CCACCTG 233 || || ||||||||||| ||| || |||||||| || ||| | || | ||||||| Sbjct 900 GCAGAGTTCCTTAACCAGGATTCTTCCACGCGCCTTAGAATACTC-ATCTCACCCACCTG 842 Query 234 TGTCGGTTTACGGTA 248 ||| ||||||||||| Sbjct 841 TGTTGGTTTACGGTA 827 >seq24 Length=1136 Score = 118 bits (130), Expect = 1e-24 Identities = 183/255 (72%), Gaps = 11/255 (4%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||| | |||||||||||||||| || |||||||| |||||| || || ||| Sbjct 1079 TTAACCTTCGAGCACCGGGCAGGCGTCACACCTTATACATCCACTTAC-GTGTTAGCAAA 1021 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCT--C 119 | |||||||||| ||||||||||| || || ||| ||| | | ||| | Sbjct 1020 GTGCTGTGTTTTTGGTAAACAGTCGGGAGGGACTCTTTGTTGCAACCTCTTTC-GCTTTC 962 Query 120 AACACGTCGTTCAC-----CAGCAGT-GGCACCCCTTCTCCCGAAGTTACGGGGCCATTT 173 | | || || | || ||| ||||| |||||| |||||| ||||| || | || Sbjct 961 GAGA-GTAAATCTCTAATACAAAAGTAGGCACACCTTCTACCGAAGATACGGTGCTAGTT 903 Query 174 TGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTG 233 ||| || ||||||||||| |||| || |||||||| || ||| || | ||||| Sbjct 902 TGCAGAGTTCCTTAACCAGGGTTCTTCCACGCGCCTTAGAATACTCATCCCACCTACCTG 843 Query 234 TGTCGGTTTACGGTA 248 ||||||||||||||| Sbjct 842 TGTCGGTTTACGGTA 828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694321112471