Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq4481 161 2e-37 seq24 123 5e-26 seq2859 116 8e-24 seq663 95.1 3e-17 >seq4481 Length=1247 Score = 161 bits (178), Expect = 2e-37 Identities = 143/181 (79%), Gaps = 12/181 (7%) Strand=Plus/Plus Query 196 TCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTG 255 ||||||||||||||||||||||| | |||||||| ||| ||| |||||| | ||||||| Sbjct 1 TCCAGCACCGGGCAGGCGTCAGCCCATATACATCATCTCTCGATTTAGCATAGACCTGTG 60 Query 256 TTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTG------------TCATAGA 303 |||||| |||||||| |||||| || |||||||||||| | | || Sbjct 61 TTTTTGTTAAACAGTTGCTTGGATCTGTTCTCTGCGGCCGGAATTAGCTCTAAACCTATT 120 Query 304 CAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCT 363 | |||| |||||||| | || ||||||| |||||||||||||||||||||| |||||| | Sbjct 121 CCGGCATCCCTTCTCGCGAACTTACGGGATCATTTTGCCGAGTTCCTTAACGATAGTTTT 180 Query 364 C 364 | Sbjct 181 C 181 >seq24 Length=1136 Score = 123 bits (136), Expect = 5e-26 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 132 ACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCCTTA 191 |||||||||||||||| |||||| | | | ||||||| |||| || ||| | ||| Sbjct 1136 ACGGCCGCCGTTTACTCGGGCTTCAATCAAATGCTTCGCTTGCGCTGACATCATCAGTTA 1077 Query 192 ACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACC 251 |||||| |||||||||||||||||| | |||||||| ||| || |||||| | | Sbjct 1076 ACCTTCGAGCACCGGGCAGGCGTCACACCTTATACATCCACTTACGTGTTAGCAAAGTGC 1017 Query 252 TGTGTTTTTGGTAAACAGTCG 272 ||||||||||||||||||||| Sbjct 1016 TGTGTTTTTGGTAAACAGTCG 996 >seq2859 Length=1125 Score = 116 bits (128), Expect = 8e-24 Identities = 105/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 141 GTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCCTTAACCTTCCAG 200 |||||||||||||| | ||||||||| ||||||| | |||||||||||| Sbjct 1125 GTTTACTGGGGCTTCGATCAACTGCTTCGCCGAAGCTAACAGCATCAATTAACCTTCCAG 1066 Query 201 CACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTT 260 |||||||||||||||| |||||||||| ||| || |||||||| |||||||||| Sbjct 1065 CACCGGGCAGGCGTCACACCCTATACATCCACTTACGTGTTAGCAGAGTGCTGTGTTTTT 1006 Query 261 GGTAAACAGTCG 272 |||||||||||| Sbjct 1005 GGTAAACAGTCG 994 >seq663 Length=308 Score = 95.1 bits (104), Expect = 3e-17 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 6 GGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGT 65 || || |||||| | ||||||||||| | || | |||||||||| |||| |||| Sbjct 107 GGAATTTTCACCTCCACTACAATTTCACTGGATCCCTGGTTGAGACAGCTCCCATCTCGT 48 Query 66 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTA 112 |||||| ||| ||| |||||| | ||| ||||||||||||||||||| Sbjct 47 TACGCCATTCATGCAGGTCGGTATTTAACCGACAAGGAATTTCGCTA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062275412352