Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq6075 315 3e-83 seq4481 163 1e-37 seq2859 109 2e-21 seq24 102 3e-19 seq3864 91.5 5e-16 >seq6075 Length=994 Score = 315 bits (348), Expect = 3e-83 Identities = 284/354 (80%), Gaps = 10/354 (3%) Strand=Plus/Plus Query 142 ACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTA 201 |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 6 ACCTAAATATATTTCGGAGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTA 65 Query 202 TCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTAC 261 |||||| ||||||| | |||||||| | ||||||||||||||| | |||||| Sbjct 66 TCCACAAGTCATCCGGGGACTTTTCAACGCCCATCGGTTCGGTCCTCCACTGGCTCTTAC 125 Query 262 CCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCA 321 | |||||||||||| |||||||||||||||||| ||||||||| | ||| ||| | Sbjct 126 ACCAGCTTCAACCTGCTCATGGATAGATCACTTCGTTTCGGGTCTGCAGCGTCTGACTAA 185 Query 322 TACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACAC 381 | ||||||||| |||||||||||||||||||| | || | ||||||| || | || Sbjct 186 TTCGCCCTATTAAGACTCGCTTTCGCTACGGCT-TCGTACTTGACTTAACCTTGCCAGAC 244 Query 382 AACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA-CCTGGTACCTAAAAGGC 440 | | | |||||||||||||||| | ||||||||| |||||| |||| || | | ||| Sbjct 245 ACCAC-AACTCGCAGGCTCATTATGCAAAAGGCAGTCCGTCACCCTGATAAATCATAGG- 302 Query 441 ACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCC 494 ||||||| ||||||| || |||||||||||| |||||||||||||| Sbjct 303 ------GCTCCGAATGATTGTAAGCTAATGGTTTCAGGTTCTATTTCACTCCCC 350 >seq4481 Length=1247 Score = 163 bits (180), Expect = 1e-37 Identities = 220/304 (72%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 52 CGGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGG-GCCCCCTAGACCATCCAGTGC 110 |||||||||||||||| | | |||| || ||| |||||| || |||||| Sbjct 838 CGGCATTCGGAGTTTGATAACCCTTGGTAGGCG-GTGAAGCCCCCGCAGGTATTCAGTGC 896 Query 111 TCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCT 170 |||||||||| | | | | ||| |||||| ||||||||||||||||||| Sbjct 897 TCTACCTCCGTTACTCTAAATTTAAGGCTAGCCCTAAAGCTATTTCGGGGAGAACCAGCT 956 Query 171 ATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACC 230 ||| | ||| |||||| |||| || ||||||||| |||||||| | |||||||| Sbjct 957 ATCTCCGGGTTCGATTGGAATTTCTCCGCTATCCACAAGTCATCCCAACCTTTTTCAACA 1016 Query 231 TAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATC 290 | ||||||||| |||||||| | |||| ||||||| ||||| ||||||||| || Sbjct 1017 GATATGGGTTCGGGCCTCCACGAAATTTTACTTTCGCTTCACCCTGCTCATGGATAGGTC 1076 Query 291 ACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTAC 350 || | ||||||||| | | | ||||| ||||||||| |||||| |||| || | Sbjct 1077 ACCCGGTTTCGGGTCTACACCACGTAACTCAGTCGCCCTATTAAGACTCGGTTTCCCTGC 1136 Query 351 GGCT 354 |||| Sbjct 1137 GGCT 1140 >seq2859 Length=1125 Score = 109 bits (120), Expect = 2e-21 Identities = 149/200 (75%), Gaps = 10/200 (5%) Strand=Plus/Minus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||| ||| | ||| || ||||| |||| || ||| | | ||| | || ||||| Sbjct 194 TCGACGACGCATTTTA-TCACCCGCCGTCTGACTGCCATGATTACACATAG-GGTATTCG 137 Query 61 GAGTTTGGTTGATTTCGGTAAGCTTG---TGGGCCCCCTAGACCATCCAGTGCTCTACCT 117 ||||||| | || |||| |||| | ||||| ||| ||| |||||||||||| Sbjct 136 GAGTTTGACAGGGTTTGGTAC-CTTGGTATAGGCCC--TAGCCCAATCAGTGCTCTACCC 80 Query 118 CCGGGAAGAAACA-CGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACG 176 || | | ||| | |||||| |||||||| ||||||| ||||||||||||||||| Sbjct 79 CCCT-ATGCTACAACATGACGCTATACCTAAATATATTTCGGAGAGAACCAGCTATCACG 21 Query 177 AAGTTTGATTGGCCTTTCAC 196 |||||||||||||||||||| Sbjct 20 AAGTTTGATTGGCCTTTCAC 1 >seq24 Length=1136 Score = 102 bits (112), Expect = 3e-19 Identities = 87/105 (83%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 93 CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAAC-ACGCGACGCTGCACCTAAATGC 151 |||||| |||| |||||||||||| || | | || || || ||| |||||||| Sbjct 104 CCCTAGCCCATTCAGTGCTCTACC-CCTACATGCTACTACTAGAGGCTATACCTAAATAT 46 Query 152 ATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 45 ATTTCGGAGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 1 >seq3864 Length=792 Score = 91.5 bits (100), Expect = 5e-16 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 510 CACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGG 569 ||||||||||||||||||||||| | ||||||||| ||| |||||||||| || || Sbjct 1 CACCTTTCCCTCACGGTACTTGTTCACTATCGGTCTGTAAGTAGTATTTAGGATTGGAGG 60 Query 570 GTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||||||| || |||||| || ||| ||| Sbjct 61 GTGGTCCCCCCGGATTCAGACAGAATATCA 90 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817386850048