Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq3864 127 5e-27 seq6075 123 6e-26 seq780 96.9 9e-18 >seq3864 Length=792 Score = 127 bits (140), Expect = 5e-27 Identities = 91/105 (87%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 315 CCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGAT 374 |||||||||||||||||| |||||||||||||| || |||||||||||| ||||||| | Sbjct 3 CCTTTCCCTCACGGTACTTGTTCACTATCGGTCTGTAAGTAGTATTTAGGATTGGAGGGT 62 Query 375 GGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||||||||| ||||||||| | | || |||| |||| ||||||| Sbjct 63 GGTCCCCCCGGATTCAGACAGAATATCACGTGTTCCGCCCTACTC 107 >seq6075 Length=994 Score = 123 bits (136), Expect = 6e-26 Identities = 215/302 (71%), Gaps = 22/302 (7%) Strand=Plus/Plus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || ||||||| ||||| ||| |||||| ||||| |||||||||||||||| | Sbjct 62 CCTATCCACAAGTCAT-CCGGGGACTTTT-CAACGCCCATCGGTTCGGTCCTCCACTGGC 119 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | |||| | | ||| |||||||| ||| ||||||||| | |||| ||||||| Sbjct 120 TC-TTACACCAGCTT-CAACCTGCTCAT-GGATAGATCACTTCGTTT-CGGGTCTG---- 171 Query 124 CCAGCGACT-----AGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGG 178 ||||| || | ||||||| ||||||||||||| ||||||| || | || Sbjct 172 -CAGCGTCTGACTAATTCGCCCTATTAAGACTCGCTTT-CGCTACGGCTTCGTACTTGAC 229 Query 179 TTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCC 238 |||| ||| |||| | | || |||| | | |||||| ||||||| | | ||||||| Sbjct 230 TTAACCTT-GCCAGACACCACAACTCGCAGGCTCATTATGCAAAAGGCAGTCCGTCACCC 288 Query 239 AACAAAGT----GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCC 294 || | ||||||| | || ||||| || | ||||||||| ||||||||||||| Sbjct 289 TGATAAATCATAGGGCTCCGAATGATTGTAAGCTAATGGTTTCAGGTTCTATTTCACTCC 348 Query 295 CC 296 || Sbjct 349 CC 350 Score = 77.0 bits (84), Expect = 8e-12 Identities = 57/67 (85%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 353 GTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGT 412 ||||||||||| || |||| ||||||||| | ||||||||||| | || |||| ||||| Sbjct 425 GTAGTATTTAGGATTAGAGGGTGGTCCCCCTAGATTCAGACAAAATATCACGTGTTCCGT 484 Query 413 CCTACTC 419 ||||||| Sbjct 485 CCTACTC 491 >seq780 Length=916 Score = 96.9 bits (106), Expect = 9e-18 Identities = 84/103 (82%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 317 TTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGG 376 ||||||||||||||||| | | |||||||||| | |||||||||||| ||||| ||||| Sbjct 916 TTTCCCTCACGGTACTA-TGCGCTATCGGTCACTGAGTAGTATTTAGTCTTGGGAGATGG 858 Query 377 TCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||| ||| ||| |||| ||||| ||||| |||| ||||| Sbjct 857 TCCTCCCGGCTTCCTACAAGGTTTCACGTGCCCCGTAGTACTC 815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241454397568