Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq24 237 4e-60 seq2859 91.5 3e-16 >seq24 Length=1136 Score = 237 bits (262), Expect = 4e-60 Identities = 301/406 (74%), Gaps = 10/406 (2%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 || |||| ||| |||| |||| |||||||||||||| |||| | ||| | | | | Sbjct 594 CGTCTACCCCTTTCGGACTCGACTTAGGACCCGACTAACCCTACGATGACGAGCATCGCG 535 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 |||| |||||| | |||||| | |||||| |||| | | |||||||||||||| Sbjct 534 TAGGAAACCTTGGGTTTTCGGCGAAGAGGATTCTCACCTCTTTTATCGCTACTCATGCCT 475 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGG-CAGCTTCACCACTGACACG 178 |||| |||||| ||| ||||| | | | | ||| | || ||||| | |||| | Sbjct 474 GCATGCTCACTTCTATCCGCTCCAACGCTCCTT-ACCGGTACATCTTCAACGCTGAATAG 416 Query 179 A-CGCTCCCCTACCCAACCACACAGGTTG---CCACAGCTTCGGCGGATAACTTAAGCCC 234 | ||||| |||||| | | | | ||| | | |||||||| | | | |||| |||| Sbjct 415 AACGCTCTCCTACCACTCAATAAA--TTGAGTCTAAAGCTTCGGTGTACATCTTA-GCCC 359 Query 235 CGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGAT 294 || || ||| || |||| |||||||| |||||||||||| |||||| ||||| |||| | Sbjct 358 CGTTATATTTTCCGCGCAGAATCACTAGACCAGTGAGCTGTTACGCTTTCTTTAAAGGGT 299 Query 295 GGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGT 354 ||||||||| |||||||||||||||||||| | ||||||||||| ||| ||||| || Sbjct 298 GGCTGCTTCTAAGCCAACCTCCTGGTTGTCACAGTAACTCCACATCGTTTTCCACTTAGA 239 Query 355 CACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 |||| ||| ||||||||| | |||||| |||| |||||||| Sbjct 238 TGTAACTTTGGGACCTTAGCTGTTAGTCTGGGTTGTTCCCCTCTCG 193 >seq2859 Length=1125 Score = 91.5 bits (100), Expect = 3e-16 Identities = 167/237 (70%), Gaps = 11/237 (5%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 || |||| ||| |||| |||| |||||| ||||||| |||| | ||| | | | | Sbjct 593 CGTCTACCCCTTTCGGACTCGACTTAGGTCCCGACTAACCCTACGATGACGAGCATCGCG 534 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 |||| |||||| | |||||| | ||||||| ||||| | | |||||||||||||| Sbjct 533 TAGGAAACCTTGGGTTTTCGGCGAAGGGGATTCTCACCCCTTTTATCGCTACTCATGCCT 474 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCG-GCAGCTTCACCACTGAC-AC 177 |||| |||||| | | ||||| | | | ||| | || ||||| | ||||| | Sbjct 473 GCATGCTCACTTCTAGCCGCTCCAGTGCTC-CTTACCGGTACACCTTCAGCGCTGACTAG 415 Query 178 GACGCTCCCCTACC---CAACCACACAGGTTG---CCACAGCTTCGGCGGATAACTT 228 |||||| |||||| ||| | | | ||| | |||||||||| ||||||||| Sbjct 414 AACGCTCTCCTACCACTCAA-AATAAATTTTGAATCTACAGCTTCGGTGGATAACTT 359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177461902848