Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq6123 224 2e-56 seq6212 86.0 1e-14 seq3794 78.8 2e-12 >seq6123 Length=898 Score = 224 bits (248), Expect = 2e-56 Identities = 211/266 (79%), Gaps = 12/266 (5%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||||||||| ||| |||| | ||| ||||||||||| |||||||||| Sbjct 389 CTTCTTAGAGGGACTG-CGGTAGTCAATACTGCGGAGGTTTGAGGCAAATACAGGTCTGT 447 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG------ 183 ||||||||||||| |||||||||||||||||||||||||| || ||||||| Sbjct 448 GATGCCCTTAGATAATCTGGGCCGCACGCGCGCTACACTGATCGATTCAACGAGCGTGAT 507 Query 184 -TTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATA 242 ||| || |||||||| ||| ||||| ||||| | || || ||||||||||| || Sbjct 508 TTTCGTC--CTTGGCCGACAGGCCTGGGCAATCTCCTCAACGTCGATCGTGCTGGGGTTA 565 Query 243 GAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACG 302 || | ||| |||| | | |||| |||||||||| |||||||| ||| ||||||||| | Sbjct 566 GATCGTTGGAATTTTCGATCTTTAACGAGGAATACCTAGTAATCGCAAGTCATCAGCTTG 625 Query 303 CGTTGATTACGTCCCTGCCCTTTGTA 328 || ||||||||||||||||||||||| Sbjct 626 CGCTGATTACGTCCCTGCCCTTTGTA 651 >seq6212 Length=42043 Score = 86.0 bits (94), Expect = 1e-14 Identities = 107/147 (73%), Gaps = 15/147 (10%) Strand=Plus/Plus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 ||| ||||||||||| | |||||||||||||||| |||||||||||||||||| Sbjct 25261 GGAGGTTTGAGGCAAATA------TGTGATGCCCTTAGATAATCTGGGCCGCACGCGCGC 25314 Query 163 TACACTGACAGAGCCAACGAG-------TTCATCACCTTGGCCGGAAGGTCTGGGTAATC 215 | |||||| || ||||||| ||| | ||||||||| || ||||| |||| Sbjct 25315 TGCACTGATCGATTCAACGAGCGTGATTTTCGT--CCTTGGCCGACAGACCTGGGCAATC 25372 Query 216 TTGTTAAACTCTGTCGTGCTGGGGATA 242 | | || | ||||||||||| || Sbjct 25373 TCCTCAACGGCGATCGTGCTGGGGTTA 25399 >seq3794 Length=6276 Score = 78.8 bits (86), Expect = 2e-12 Identities = 66/81 (81%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 ||| |||| | | || | ||||| |||| |||||||| ||| ||||||||| ||| || Sbjct 4908 TTGGAATTTTCGATCGTTAACGAAGAATACCTAGTAATCGCAAGTCATCAGCTTGCGCTG 4849 Query 308 ATTACGTCCCTGCCCTTTGTA 328 |||| |||||||||||||||| Sbjct 4848 ATTATGTCCCTGCCCTTTGTA 4828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947088921856