Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq24 206 9e-51 seq6075 147 7e-33 seq4481 134 5e-29 seq2859 132 2e-28 >seq24 Length=1136 Score = 206 bits (228), Expect = 9e-51 Identities = 306/420 (73%), Gaps = 13/420 (3%) Strand=Plus/Plus Query 144 GTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 ||||||||| || ||||||| | |||||||||||||||||||| |||||||||| || Sbjct 1 GTGAAAGGCCAATCAAACTTCGTGATAGCTGGTTCTCTCCGAAATATATTTAGGTATAGC 60 Query 204 CTCAAGTATCACCAT-CGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTAC 262 ||| |||| | ||| |||||||||||||| |||||||| | | || ||| Sbjct 61 CTCTAGTAGTAGCATGTAGGGGTAGAGCACTGAATGGGCTAGGGCTGCTTACCGCGGTAC 120 Query 263 CAAACCATTGCAAACTCCGAATGC-GCATCAGTTTTACCGCGGGAGTGAGGGCATGGGTG 321 |||||| | |||||| ||||| | ||| || | | |||||| ||| ||||| Sbjct 121 CAAACCCTATCAAACTTCGAATACTACAT--GTGCAATCTAGGGAGTCAGGCGTAGGGTG 178 Query 322 CTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACA 381 ||| ||| ||||||| ||| || || ||||| ||||||||| ||| || | ||| Sbjct 179 ATAAAATCCTATGTCGAGAGGGGAACAACCCAGACTAACAGCTAAGGTCCCAAAGTTACA 238 Query 382 GCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAG 441 |||||| || ||||| || || || |||| | |||| |||||||| ||||||| Sbjct 239 TCTAAGTGGAA--AACGATGTGGAGTTACTGTGACAACCAGGAGGTTGGCTTAGAAGCAG 296 Query 442 CCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG-GAGTCGGGCGTGGATAATA- 499 ||| | |||||||| ||||||||||||||| ||| || || || ||| ||| |||| Sbjct 297 CCA-CCCTTTAAAGAAAGCGTAACAGCTCACTGGTCTAGTGATTC-TGCGCGGAAAATAT 354 Query 500 ATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGATC-ATTTATATGATCGGTAGGGGAGC 558 | |||| |||| ||| |||||||| | | || |||||| ||| |||||| |||| Sbjct 355 AACGGG-GCTAAGATGTACACCGAAGCTTTAGACTCAATTTAT-TGAGTGGTAGGAGAGC 412 >seq6075 Length=994 Score = 147 bits (162), Expect = 7e-33 Identities = 153/200 (77%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGAC--AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| || ||||||| |||| | || ||||||||||| |||||||||| ||| Sbjct 204 CGAGTCTTAATAGGGCGAATTAGTCAGACGCTGCAGACCCGAAACGAAGTGATCTATCCA 145 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 || |||| ||||| || |||| | | |||||| ||||||| | |||||||| Sbjct 144 TGAGCAGGTTGAAGCTGGTGTAAGAGCCAGTGGAGGACCGAACCGATGGGCGTTGAAAAG 85 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | |||||| ||||| |||||||||||||| || ||||||| | |||||||||||| Sbjct 84 TCCCCGGATGACTTGTGGATAGGGGTGAAAGGCCAATCAAACTTCGTGATAGCTGGTTCT 25 Query 180 CTCCGAAAACTATTTAGGTA 199 |||||||| |||||||||| Sbjct 24 CTCCGAAATATATTTAGGTA 5 >seq4481 Length=1247 Score = 134 bits (148), Expect = 5e-29 Identities = 261/378 (69%), Gaps = 7/378 (2%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGAC--AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| || |||||||| ||| | ||||||||||||||||| |||| ||| ||| Sbjct 1126 CGAGTCTTAATAGGGCGACTGAGTTACGTGGTGTAGACCCGAAACCGGGTGACCTATCCA 1067 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 || |||| ||||| |||| | | |||||| ||||||||| |||||||||| Sbjct 1066 TGAGCAGGGTGAAGCGAAAGTAAAATTTCGTGGAGGCCCGAACCCATATCTGTTGAAAAA 1007 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 ||||||| ||||| ||| || |||| | || | ||| ||| |||||||||||| Sbjct 1006 GGTTGGGATGACTTGTGGATAGCGGAGAAATTCCAATCGAACCCGGAGATAGCTGGTTCT 947 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTAT-CACCATCGGGGGTAGAGCACTGTTAT 238 | |||||| |||||| |||| || | | | | ||| |||||||||||| || Sbjct 946 CCCCGAAATAGCTTTAGGGCTAGCCTTAAATTTAGAGTAACGGAGGTAGAGCACTG-AAT 888 Query 239 GGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATG-CGCATCAGTTTT 297 || |||| | | | | |||||| | ||||||||||||| || || | || | Sbjct 887 ACCTGCGGGGGCTTCACCGCCTACCAAGGGTTATCAAACTCCGAATGCCGTAT-ACTTAT 829 Query 298 ACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 | ||||| || ||| || |||| | | || ||||||| || | || ||| Sbjct 828 A-TTTAGGAGTCAGACTATGTATGATAAGATTCATGGTCGAGAGGGAAACAGCCCAGACC 770 Query 358 ATCAGCTAAGGCCCCGAA 375 |||||||||| ||| || Sbjct 769 GTCAGCTAAGGTCCCAAA 752 >seq2859 Length=1125 Score = 132 bits (146), Expect = 2e-28 Identities = 181/247 (73%), Gaps = 7/247 (3%) Strand=Plus/Plus Query 144 GTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 ||||||||| || ||||||| | |||||||||||||||||||| |||||||||| || Sbjct 1 GTGAAAGGCCAATCAAACTTCGTGATAGCTGGTTCTCTCCGAAATATATTTAGGTATAGC 60 Query 204 CTCAAGTATCACCAT-CGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTAC 262 ||| || | ||| ||||||||||||||| | |||||||| | || | | ||| Sbjct 61 GTCATGTTGTAGCATAGGGGGGTAGAGCACTGATTGGGCTAGGGCCT-ATACCAAGGTAC 119 Query 263 CAAACCATTGCAAACTCCGAATGCGCATCAGTTTTACCGCGGGAGT--GAGGGCATGGGT 320 |||||| | |||||||||||| | | | || | | | || ||| || ||| |||| Sbjct 120 CAAACCCTGTCAAACTCCGAATAC-CCTATGTGTAATCATGGCAGTCAGACGGC--GGGT 176 Query 321 GCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGAC 380 | ||| | ||| ||||||| || || || ||||| ||||||||| ||| || ||| Sbjct 177 GATAAAATGCGTCGTCGAGAGGGAAACAACCCAGACTACCAGCTAAGGTCCCAAAGTGAT 236 Query 381 AGCTAAG 387 | || || Sbjct 237 AACTCAG 243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689401860608