Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq5205 389 1e-105 seq7791 176 1e-41 seq1365 149 2e-33 seq4632 114 4e-23 seq11406 109 2e-21 seq66 102 3e-19 seq6003 95.1 4e-17 seq717 89.7 2e-15 seq9294 75.2 4e-11 >seq5205 Length=244 Score = 389 bits (430), Expect = 1e-105 Identities = 229/238 (96%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||| | ||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 7 CTCCCGCCTATACTACACCTTCCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 66 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||| Sbjct 67 CAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGTCCGTTCCCTTGGCTGCTGTTTCGCTAG 126 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 186 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 187 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 244 >seq7791 Length=21755 Score = 176 bits (194), Expect = 1e-41 Identities = 130/153 (85%), Gaps = 13/153 (8%) Strand=Plus/Minus Query 274 AGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGT 333 ||||||||||||||||||||||||||||| ||||||||||||| |||| ||||| |||| Sbjct 8592 AGTCGGACTAGAGTCAAGCTCAACAGGGTTTTCTTTCCCCGCTAATTCTGCCAAATCCGT 8533 Query 334 TCCC--------TTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 385 |||| ||||||| |||||||||||| |||||||||||||||||||| ||| | Sbjct 8532 TCCCTTGTTCCTTTGGCTGCTGTTTCGCTAGATGGTAGATAGGGACAGTGGGAACCTCAT 8473 Query 386 TAATCCATTCATGCGCGTCACTAATTAGATGAC 418 | ||||||||||||||||||||||||||| Sbjct 8472 T-----ATTCATGCGCGTCACTAATTAGATGAC 8445 >seq1365 Length=1451 Score = 149 bits (164), Expect = 2e-33 Identities = 96/105 (91%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 308 TTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG 367 || || |||||||| ||||| ||||||||||||||| |||||||||| |||||||||| Sbjct 903 TTACCTGCTGATTCTACCAAGTCCGTTCCCTTGGCTGCTGTTTCGCTAGGTAGTAGATAG 962 Query 368 GGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 963 GGACAGTGGGAATCTCGTTAATCCATTCATGCACGTCACTAATTA 1007 >seq4632 Length=351 Score = 114 bits (126), Expect = 4e-23 Identities = 75/83 (90%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 31 TTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGC 90 |||| |||||| | |||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 1 TTCTTCATGAGCTCACCTTAGGACACCTGTGTTATCATTTAACAGATGTGCCGCCCCAGC 60 Query 91 CAAACTCCCCACCTGACAATGTC 113 ||||||||||||||||| ||||| Sbjct 61 CAAACTCCCCACCTGACTATGTC 83 >seq11406 Length=12862 Score = 109 bits (120), Expect = 2e-21 Identities = 60/60 (100%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 60 >seq66 Length=872 Score = 102 bits (112), Expect = 3e-19 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| ||| || | ||||||||||||| |||||| | |||||||||||||| ||||| Sbjct 789 CTTTTACTCCACTGAAGATTTCTGTTCTTCATGAGCTCACCTTAGGACACCTGTGTTATC 848 Query 67 GTTTAACAGATGTGCCGCCCCAGC 90 ||||||||||||||||||||||| Sbjct 849 ATTTAACAGATGTGCCGCCCCAGC 872 >seq6003 Length=16187 Score = 95.1 bits (104), Expect = 4e-17 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 267 TTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCA 326 |||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||| Sbjct 16072 TTCACAAAGTCGGACTAGAGTCAAGCTCAAAAGGGCTTTCTTTCCCCGCTGATTCTGCCA 16131 Query 327 AG 328 || Sbjct 16132 AG 16133 >seq717 Length=2986 Score = 89.7 bits (98), Expect = 2e-15 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 19 AGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATG 78 || |||||||| |||| |||||| | |||||||||||||| ||||| ||||||||||| Sbjct 72 AGAAGATTTCTATTCTTCATGAGCTCACCTTAGGACACCTGTGTTATCATTTAACAGATG 13 Query 79 TGCCGCCCCAGC 90 |||||||||||| Sbjct 12 TGCCGCCCCAGC 1 >seq9294 Length=6441 Score = 75.2 bits (82), Expect = 4e-11 Identities = 57/66 (86%), Gaps = 1/66 (2%) Strand=Plus/Minus Query 323 GCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCT 382 |||||| || |||||||||| | ||||| | ||| |||||||||||||||||| ||||| Sbjct 1679 GCCAAGTCCATTCCCTTGGCGGCTGTTTCCC-AGAGAGTAGATAGGGACAGTGGAAATCT 1621 Query 383 CGTTAA 388 |||||| Sbjct 1620 CGTTAA 1615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635008240096