Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq41 178 2e-42 seq13 178 2e-42 seq303 172 8e-41 seq206 172 8e-41 seq101 172 8e-41 seq19 168 1e-39 seq4 161 1e-37 >seq41 Length=149690 Score = 178 bits (196), Expect = 2e-42 Identities = 183/232 (79%), Gaps = 7/232 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| || ||||||||||||| |||| ||||| ||| Sbjct 8323 GTACAAAGGGCAGGGACGTATTCAACGCAAG-TTGATGACTCGCGTTTACAAGGAA-TTC 8380 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| | | ||| || || | || ||||| | ||||||| |||||||||| ||| Sbjct 8381 CTCGTT-CATAAATACAGTTACAGTATTCAATCCCAAGCACGATGCAATTTCAAAGTTTA 8439 Query 121 CC-CGGACCTGTCGGCCAAGG--TGATA-GACTCGTTGAATACATCAGTGTAGCGCGCGT 176 || | | || | | || | || ||| |||| |||||||||||| ||||| Sbjct 8440 CCATACTCTTCTCAGAAATGGTCTCTTACAACTATTTGATCGCATCAGTGTAGCCCGCGT 8499 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 || |||||| ||||| ||||||||||||||||||||||||||| |||||||| Sbjct 8500 GCAGCCCAGGACATCAAAGGGCATCACAGACCTGTTATTGCCTAAAACTTCC 8551 >seq13 Length=208297 Score = 178 bits (196), Expect = 2e-42 Identities = 183/232 (79%), Gaps = 7/232 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| || ||||||||||||| |||| ||||| ||| Sbjct 9648 GTACAAAGGGCAGGGACGTATTCAACGCAAG-TTGATGACTCGCGTTTACAAGGAA-TTC 9705 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| | | ||| || || | || ||||| | ||||||| |||||||||| ||| Sbjct 9706 CTCGTT-CATAAATACAGTTACAGTATTCAATCCCAAGCACGATGCAATTTCAAAGTTTA 9764 Query 121 CC-CGGACCTGTCGGCCAAGG--TGATA-GACTCGTTGAATACATCAGTGTAGCGCGCGT 176 || | | || | | || | || ||| |||| |||||||||||| ||||| Sbjct 9765 CCATACTCTTCTCAGAAATGGTCTCTTACAACTATTTGATCGCATCAGTGTAGCCCGCGT 9824 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 || |||||| ||||| ||||||||||||||||||||||||||| |||||||| Sbjct 9825 GCAGCCCAGGACATCAAAGGGCATCACAGACCTGTTATTGCCTAAAACTTCC 9876 >seq303 Length=3911 Score = 172 bits (190), Expect = 8e-41 Identities = 182/232 (78%), Gaps = 7/232 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| || ||||||||||||| |||| ||||| ||| Sbjct 715 GTACAAAGGGCAGGGACGTATTCAACGCAAG-TTGATGACTCGCGTTTACAAGGAA-TTC 658 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| | | ||| || || | || ||||| | ||||||| |||||||||| || Sbjct 657 CTCGTT-CATAAATACAGTTACAGTATTCAATCCCAAGCACGATGCAATTTCAAAGTTTG 599 Query 121 CC-CGGACCTGTCGGCCAAGG--TGATA-GACTCGTTGAATACATCAGTGTAGCGCGCGT 176 || | | || | | || | || ||| |||| |||||||||||| ||||| Sbjct 598 CCATACTCTTCTCAGAAATGGTCTCTTACAACTATTTGATCGCATCAGTGTAGCCCGCGT 539 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 || |||||| ||||| ||||||||||||||||||||||||||| |||||||| Sbjct 538 GCAGCCCAGGACATCAAAGGGCATCACAGACCTGTTATTGCCTAAAACTTCC 487 >seq206 Length=5412 Score = 172 bits (190), Expect = 8e-41 Identities = 182/232 (78%), Gaps = 7/232 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| || ||||||||||||| |||| ||||| ||| Sbjct 729 GTACAAAGGGCAGGGACGTATTCAACGCAAG-TTGATGACTCGCGTTTACAAGGAA-TTC 786 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| | | ||| || || | || ||||| | ||||||| |||||||||| || Sbjct 787 CTCGTT-CATAAATACAGTTACAGTATTCAATCCCAAGCACGATGCAATTTCAAAGTTTG 845 Query 121 CC-CGGACCTGTCGGCCAAGG--TGATA-GACTCGTTGAATACATCAGTGTAGCGCGCGT 176 || | | || | | || | || ||| |||| |||||||||||| ||||| Sbjct 846 CCATACTCTTCTCAGAAATGGTCTCTTACAACTATTTGATCGCATCAGTGTAGCCCGCGT 905 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 || |||||| ||||| ||||||||||||||||||||||||||| |||||||| Sbjct 906 GCAGCCCAGGACATCAAAGGGCATCACAGACCTGTTATTGCCTAAAACTTCC 957 >seq101 Length=10288 Score = 172 bits (190), Expect = 8e-41 Identities = 182/232 (78%), Gaps = 7/232 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| || ||||||||||||| |||| ||||| ||| Sbjct 4559 GTACAAAGGGCAGGGACGTATTCAACGCAAG-TTGATGACTCGCGTTTACAAGGAA-TTC 4616 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| | | ||| || || | || ||||| | ||||||| |||||||||| || Sbjct 4617 CTCGTT-CATAAATACAGTTACAGTATTCAATCCCAAGCACGATGCAATTTCAAAGTTTG 4675 Query 121 CC-CGGACCTGTCGGCCAAGG--TGATA-GACTCGTTGAATACATCAGTGTAGCGCGCGT 176 || | | || | | || | || ||| |||| |||||||||||| ||||| Sbjct 4676 CCATACTCTTCTCAGAAATGGTCTCTTACAACTATTTGATCGCATCAGTGTAGCCCGCGT 4735 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 || |||||| ||||| ||||||||||||||||||||||||||| |||||||| Sbjct 4736 GCAGCCCAGGACATCAAAGGGCATCACAGACCTGTTATTGCCTAAAACTTCC 4787 >seq19 Length=190679 Score = 168 bits (186), Expect = 1e-39 Identities = 181/232 (78%), Gaps = 7/232 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| || ||||||||||||| |||| ||||||| | Sbjct 181834 GTACAAAGGGCAGGGACGTATTCAACGCAAG-TTGATGACTCGCGTTTACAAGGAATT-C 181777 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| | | | || || || | || ||||| | ||||||| ||||||| || || Sbjct 181776 CTCGTTCATAAATA-CAGTTACAGTATTCAATCCCAAGCACGATGCAATTTCAGAGTTTG 181718 Query 121 CCCGGACCTG-TCGGCCAAGGTGA--TAGA-CTCGTTGAATACATCAGTGTAGCGCGCGT 176 || || || | | ||| || | || |||| |||||||||||| ||||| Sbjct 181717 CCATACTCTTCTCAGAAATGGTCTCTTACAACTATTTGATCGCATCAGTGTAGCCCGCGT 181658 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 || |||||| ||||| ||||||||||||||||||||||||||| |||||||| Sbjct 181657 GCAGCCCAGGACATCAAAGGGCATCACAGACCTGTTATTGCCTAAAACTTCC 181606 >seq4 Length=289758 Score = 161 bits (178), Expect = 1e-37 Identities = 181/233 (78%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| || ||||||||||||| |||| ||||| ||| Sbjct 248 GTACAAAGGGCAGGGACGTATTCAACGCAAG-TTGATGACTCGCGTTTACAAGGAA-TTC 305 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCC-CATCACGATGAAATTTCAAAGATT 119 |||||| | | ||| || || | || ||||| || ||||||| ||||||| || || Sbjct 306 CTCGTT-CATAAATACAGTTACAGTATTCAATCCCACAGCACGATGCAATTTCAGAGTTT 364 Query 120 ACC-CGGACCTGTCGGCCAAGG--TGATA-GACTCGTTGAATACATCAGTGTAGCGCGCG 175 || | | || | | || | || ||| |||| |||||||||||| |||| Sbjct 365 GCCATACTCTTCTCAGAAATGGTCTCTTACAACTATTTGATCGCATCAGTGTAGCCCGCG 424 Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||| |||||| ||||| |||||||||||| |||||||||||||| |||||||| Sbjct 425 TGCAGCCCAGGACATCAAAGGGCATCACACACCTGTTATTGCCTAAAACTTCC 477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751996845595