Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq303 129 2e-27 seq101 129 2e-27 seq41 129 2e-27 seq19 129 2e-27 seq13 129 2e-27 >seq303 Length=3911 Score = 129 bits (142), Expect = 2e-27 Identities = 102/121 (84%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 ||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||| Sbjct 2838 TGTTGGGACCCGAAAGATGGTGAACTATGCCCGAGTAGGATGAAGCCAGAGGAAACTCTG 2897 Query 624 GTGGAGGCTCG-CAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 ||| | | || || | ||| ||||||||||| |||| | ||||||||||||||| Sbjct 2898 GTGAAAGTCCGTTTACGATGCTGACGTGCAAATCGCTCGTTTGACTTGGGTATAGGGGCG 2957 Query 683 A 683 | Sbjct 2958 A 2958 Score = 125 bits (138), Expect = 3e-26 Identities = 127/165 (77%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA----TGGGAGGTAAATTTCTTCTAAAGCT 95 |||||| ||||||||| | | |||| ||| |||| | || || || || || ||| Sbjct 2248 GAGTCGGGTTGTTTGGTAGTACAGCCTTAATGAATTGGGTGTTATATATCATCCAAGGCT 2307 Query 96 AAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTT 155 |||||| |||||||||||||| ||||||| |||| ||||||||||||| ||||| Sbjct 2308 AAATATGAAAGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGGACTTT 2367 Query 156 GGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGC 200 | ||||||||| || || || ||||| ||||| |||||||||| Sbjct 2368 GAAAAGAGAGTGCAATAGTACTTGAAACCGTTGAGAGGGAAGCGC 2412 >seq101 Length=10288 Score = 129 bits (142), Expect = 2e-27 Identities = 102/121 (84%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 ||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||| Sbjct 2419 TGTTGGGACCCGAAAGATGGTGAACTATGCCCGAGTAGGATGAAGCCAGAGGAAACTCTG 2360 Query 624 GTGGAGGCTCG-CAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 ||| | | || || | ||| ||||||||||| |||| | ||||||||||||||| Sbjct 2359 GTGAAAGTCCGTTTACGATGCTGACGTGCAAATCGCTCGTTTGACTTGGGTATAGGGGCG 2300 Query 683 A 683 | Sbjct 2299 A 2299 Score = 122 bits (134), Expect = 4e-25 Identities = 126/165 (76%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA----TGGGAGGTAAATTTCTTCTAAAGCT 95 |||||| ||||||||| | | |||| ||| |||| | || || || || || ||| Sbjct 3009 GAGTCGGGTTGTTTGGTAGTACAGCCTTAATGAGTTGGGTGTTATATATCATCCAAGGCT 2950 Query 96 AAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTT 155 |||||| |||||||||||||| ||||||| |||| ||||||||||||| ||||| Sbjct 2949 AAATATGAAAGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGGACTTT 2890 Query 156 GGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGC 200 | || |||||| || || || ||||| ||||| |||||||||| Sbjct 2889 GAAAGGAGAGTGCAATAGTACTTGAAACCGTTGAGAGGGAAGCGC 2845 >seq41 Length=149690 Score = 129 bits (142), Expect = 2e-27 Identities = 102/121 (84%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 ||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||| Sbjct 6172 TGTTGGGACCCGAAAGATGGTGAACTATGCCCGAGTAGGATGAAGCCAGAGGAAACTCTG 6113 Query 624 GTGGAGGCTCG-CAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 ||| | | || || | ||| ||||||||||| |||| | ||||||||||||||| Sbjct 6112 GTGAAAGTCCGTTTACGATGCTGACGTGCAAATCGCTCGTTTGACTTGGGTATAGGGGCG 6053 Query 683 A 683 | Sbjct 6052 A 6052 Score = 116 bits (128), Expect = 2e-23 Identities = 125/165 (76%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA----TGGGAGGTAAATTTCTTCTAAAGCT 95 |||||| ||||||||| | | |||| ||| |||| | || || || || || ||| Sbjct 6762 GAGTCGGGTTGTTTGGTAGTACAGCCTTAATGAGTTGGGTGTTATATATCATCCAAGGCT 6703 Query 96 AAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTT 155 |||||| |||||||||||||| ||||||| |||| |||||||| |||| ||||| Sbjct 6702 AAATATGAAAGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGGAAAGGACTTT 6643 Query 156 GGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGC 200 | || |||||| || || || ||||| ||||| |||||||||| Sbjct 6642 GAAAGGAGAGTGCAATAGTACTTGAAACCGTTGAGAGGGAAGCGC 6598 >seq19 Length=190679 Score = 129 bits (142), Expect = 2e-27 Identities = 102/121 (84%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 ||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||| Sbjct 183995 TGTTGGGACCCGAAAGATGGTGAACTATGCCCGAGTAGGATGAAGCCAGAGGAAACTCTG 184054 Query 624 GTGGAGGCTCG-CAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 ||| | | || || | ||| ||||||||||| |||| | ||||||||||||||| Sbjct 184055 GTGAAAGTCCGTTTACGATGCTGACGTGCAAATCGCTCGTTTGACTTGGGTATAGGGGCG 184114 Query 683 A 683 | Sbjct 184115 A 184115 Score = 125 bits (138), Expect = 3e-26 Identities = 127/165 (77%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA----TGGGAGGTAAATTTCTTCTAAAGCT 95 |||||| ||||||||| | | |||| ||| |||| | || || || || || ||| Sbjct 183404 GAGTCGGGTTGTTTGGTAGTACAGCCTTAATGAATTGGGTGTTATATATCATCCAAGGCT 183463 Query 96 AAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTT 155 |||||| |||||||||||||| ||||||| |||| ||||||||||||| ||||| Sbjct 183464 AAATATGAAAGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGGACTTT 183523 Query 156 GGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGC 200 | ||||||||| || || || ||||| ||||| |||||||||| Sbjct 183524 GAAAAGAGAGTGCAATAGTACTTGAAACCGTTGAGAGGGAAGCGC 183568 >seq13 Length=208297 Score = 129 bits (142), Expect = 2e-27 Identities = 102/121 (84%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 ||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||| Sbjct 7494 TGTTGGGACCCGAAAGATGGTGAACTATGCCCGAGTAGGATGAAGCCAGAGGAAACTCTG 7435 Query 624 GTGGAGGCTCG-CAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 ||| | | || || | ||| ||||||||||| |||| | ||||||||||||||| Sbjct 7434 GTGAAAGTCCGTTTACGATGCTGACGTGCAAATCGCTCGTTTGACTTGGGTATAGGGGCG 7375 Query 683 A 683 | Sbjct 7374 A 7374 Score = 116 bits (128), Expect = 2e-23 Identities = 125/165 (76%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA----TGGGAGGTAAATTTCTTCTAAAGCT 95 |||||| ||||||||| | | |||| ||| |||| | || || || || || ||| Sbjct 8084 GAGTCGGGTTGTTTGGTAGTACAGCCTTAATGAGTTGGGTGTTATATATCATCCAAGGCT 8025 Query 96 AAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTT 155 |||||| |||||||||||||| ||||||| |||| |||||||| |||| ||||| Sbjct 8024 AAATATGAAAGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGGAAAGGACTTT 7965 Query 156 GGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGC 200 | |||||||| || || || ||||| ||||| |||||||||| Sbjct 7964 GAGAAGAGAGTGCAATAGTACTTGAAACCGTTGAGAGGGAAGCGC 7920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079990712150