Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq41 154 3e-35 seq13 154 3e-35 seq303 149 1e-33 seq206 149 1e-33 seq101 149 1e-33 seq19 145 1e-32 seq4 138 2e-30 >seq41 Length=149690 Score = 154 bits (170), Expect = 3e-35 Identities = 197/263 (75%), Gaps = 9/263 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTAT-CGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||| ||||| || | | ||||||||||| ||||||||||||||||||| Sbjct 8583 CTTCTTAGAGGTACTATTCGTTTTTCACGGATGGAAGTTTTAGGCAATAACAGGTCTGTG 8524 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT---CA 187 |||||||| ||||| |||||| ||||||| |||||||||| ||| |||| Sbjct 8523 ATGCCCTTTGATGTCCTGGGCTGCACGCGGGCTACACTGATGCGATCAAATAGTTGTAAG 8464 Query 188 TCACCTTGGCCG-GAAG-GTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 ||| | | | |||| || | ||||| ||| | ||| | ||||||| ||||| || Sbjct 8463 AGACCATTTCTGAGAAGAGTAT-GGTAAACTT-TGAAATTGCATCGTGCTTGGGATTGAA 8406 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 | || || | | | | |||||||||| ||| |||| |||| ||||||| | |||| Sbjct 8405 TACTGTAACT-GTATTTATGAACGAGGAATTCCTTGTAAACGCGAGTCATCAACTTGCGT 8347 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||| ||||||||||||||||||| Sbjct 8346 TGAATACGTCCCTGCCCTTTGTA 8324 >seq13 Length=208297 Score = 154 bits (170), Expect = 3e-35 Identities = 197/263 (75%), Gaps = 9/263 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTAT-CGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||| ||||| || | | ||||||||||| ||||||||||||||||||| Sbjct 9908 CTTCTTAGAGGTACTATTCGTTTTTCACGGATGGAAGTTTTAGGCAATAACAGGTCTGTG 9849 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT---CA 187 |||||||| ||||| |||||| ||||||| |||||||||| ||| |||| Sbjct 9848 ATGCCCTTTGATGTCCTGGGCTGCACGCGGGCTACACTGATGCGATCAAATAGTTGTAAG 9789 Query 188 TCACCTTGGCCG-GAAG-GTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 ||| | | | |||| || | ||||| ||| | ||| | ||||||| ||||| || Sbjct 9788 AGACCATTTCTGAGAAGAGTAT-GGTAAACTT-TGAAATTGCATCGTGCTTGGGATTGAA 9731 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 | || || | | | | |||||||||| ||| |||| |||| ||||||| | |||| Sbjct 9730 TACTGTAACT-GTATTTATGAACGAGGAATTCCTTGTAAACGCGAGTCATCAACTTGCGT 9672 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||| ||||||||||||||||||| Sbjct 9671 TGAATACGTCCCTGCCCTTTGTA 9649 >seq303 Length=3911 Score = 149 bits (164), Expect = 1e-33 Identities = 196/263 (75%), Gaps = 9/263 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTAT-CGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||| ||||| || | | ||||||||||| ||||||||||||||||||| Sbjct 455 CTTCTTAGAGGTACTATTCGTTTTTCACGGATGGAAGTTTTAGGCAATAACAGGTCTGTG 514 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT---CA 187 |||||||| ||||| |||||| ||||||| |||||||||| ||| |||| Sbjct 515 ATGCCCTTTGATGTCCTGGGCTGCACGCGGGCTACACTGATGCGATCAAATAGTTGTAAG 574 Query 188 TCACCTTGGCCG-GAAG-GTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 ||| | | | |||| || | || || ||| | ||| | ||||||| ||||| || Sbjct 575 AGACCATTTCTGAGAAGAGTAT-GGCAAACTT-TGAAATTGCATCGTGCTTGGGATTGAA 632 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 | || || | | | | |||||||||| ||| |||| |||| ||||||| | |||| Sbjct 633 TACTGTAACT-GTATTTATGAACGAGGAATTCCTTGTAAACGCGAGTCATCAACTTGCGT 691 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||| ||||||||||||||||||| Sbjct 692 TGAATACGTCCCTGCCCTTTGTA 714 >seq206 Length=5412 Score = 149 bits (164), Expect = 1e-33 Identities = 196/263 (75%), Gaps = 9/263 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTAT-CGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||| ||||| || | | ||||||||||| ||||||||||||||||||| Sbjct 989 CTTCTTAGAGGTACTATTCGTTTTTCACGGATGGAAGTTTTAGGCAATAACAGGTCTGTG 930 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT---CA 187 |||||||| ||||| |||||| ||||||| |||||||||| ||| |||| Sbjct 929 ATGCCCTTTGATGTCCTGGGCTGCACGCGGGCTACACTGATGCGATCAAATAGTTGTAAG 870 Query 188 TCACCTTGGCCG-GAAG-GTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 ||| | | | |||| || | || || ||| | ||| | ||||||| ||||| || Sbjct 869 AGACCATTTCTGAGAAGAGTAT-GGCAAACTT-TGAAATTGCATCGTGCTTGGGATTGAA 812 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 | || || | | | | |||||||||| ||| |||| |||| ||||||| | |||| Sbjct 811 TACTGTAACT-GTATTTATGAACGAGGAATTCCTTGTAAACGCGAGTCATCAACTTGCGT 753 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||| ||||||||||||||||||| Sbjct 752 TGAATACGTCCCTGCCCTTTGTA 730 >seq101 Length=10288 Score = 149 bits (164), Expect = 1e-33 Identities = 196/263 (75%), Gaps = 9/263 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTAT-CGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||| ||||| || | | ||||||||||| ||||||||||||||||||| Sbjct 4819 CTTCTTAGAGGTACTATTCGTTTTTCACGGATGGAAGTTTTAGGCAATAACAGGTCTGTG 4760 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT---CA 187 |||||||| ||||| |||||| ||||||| |||||||||| ||| |||| Sbjct 4759 ATGCCCTTTGATGTCCTGGGCTGCACGCGGGCTACACTGATGCGATCAAATAGTTGTAAG 4700 Query 188 TCACCTTGGCCG-GAAG-GTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 ||| | | | |||| || | || || ||| | ||| | ||||||| ||||| || Sbjct 4699 AGACCATTTCTGAGAAGAGTAT-GGCAAACTT-TGAAATTGCATCGTGCTTGGGATTGAA 4642 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 | || || | | | | |||||||||| ||| |||| |||| ||||||| | |||| Sbjct 4641 TACTGTAACT-GTATTTATGAACGAGGAATTCCTTGTAAACGCGAGTCATCAACTTGCGT 4583 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||| ||||||||||||||||||| Sbjct 4582 TGAATACGTCCCTGCCCTTTGTA 4560 >seq19 Length=190679 Score = 145 bits (160), Expect = 1e-32 Identities = 194/263 (74%), Gaps = 9/263 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTAT-CGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||| ||||| || | | ||||||||||| ||||||||||||||||||| Sbjct 181574 CTTCTTAGAGGTACTATTCGTTTTTCACGGATGGAAGTTTTAGGCAATAACAGGTCTGTG 181633 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT---CA 187 |||||||| ||||| |||||| ||||||| |||||||||| ||| |||| Sbjct 181634 ATGCCCTTTGATGTCCTGGGCTGCACGCGGGCTACACTGATGCGATCAAATAGTTGTAAG 181693 Query 188 TCACCTTGGCCG-GAAG-GTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 ||| | | | |||| || ||| || | | ||| | ||||||| ||||| || Sbjct 181694 AGACCATTTCTGAGAAGAGTATGGCAAA--CTCTGAAATTGCATCGTGCTTGGGATTGAA 181751 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 | || || | | | | |||||||||| ||| |||| |||| ||||||| | |||| Sbjct 181752 TACTGTAACT-GTATTTATGAACGAGGAATTCCTTGTAAACGCGAGTCATCAACTTGCGT 181810 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||| ||||||||||||||||||| Sbjct 181811 TGAATACGTCCCTGCCCTTTGTA 181833 >seq4 Length=289758 Score = 138 bits (152), Expect = 2e-30 Identities = 194/264 (73%), Gaps = 10/264 (4%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTAT-CGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||| ||||| || | | ||||||||||| |||||||||||||| |||| Sbjct 509 CTTCTTAGAGGTACTATTCGTTTTTCACGGATGGAAGTTTTAGGCAATAACAGGTGTGTG 450 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT---CA 187 |||||||| ||||| |||||| ||||||| |||||||||| ||| |||| Sbjct 449 ATGCCCTTTGATGTCCTGGGCTGCACGCGGGCTACACTGATGCGATCAAATAGTTGTAAG 390 Query 188 TCACCTTGGCCG-GAAG-GTCTGGGTAATCTTGTTAAACTCTGTCGTGCTG-GGGATAGA 244 ||| | | | |||| || ||| || | | ||| | |||||||| ||||| || Sbjct 389 AGACCATTTCTGAGAAGAGTATGGCAAA--CTCTGAAATTGCATCGTGCTGTGGGATTGA 332 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 | || || | | | | |||||||||| ||| |||| |||| ||||||| | ||| Sbjct 331 ATACTGTAACT-GTATTTATGAACGAGGAATTCCTTGTAAACGCGAGTCATCAACTTGCG 273 Query 305 TTGATTACGTCCCTGCCCTTTGTA 328 |||| ||||||||||||||||||| Sbjct 272 TTGAATACGTCCCTGCCCTTTGTA 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947195898624