Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq62 199 3e-46 seq19 114 1e-20 seq26 105 5e-18 >seq62 Length=89227 Score = 199 bits (220), Expect = 3e-46 Identities = 416/611 (68%), Gaps = 18/611 (3%) Strand=Plus/Minus Query 61034 TATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGC 61093 ||||| |||| | || ||||||| || || || ||||| ||| | | || ||| Sbjct 48732 TATTGGAAGACA---CTAGTCGTTTTGTTTTATTTCCCATAAGATATAGGCAAATATGGG 48676 Query 61094 GCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAG 61153 | || ||| ||||||||| |||||||| || || || ||||| | ||| ||| Sbjct 48675 AATTATATAAACGTGCGGAAGCTAGTTTCTGGACAGTTGAAGAAGTCGACCTATCCCAAG 48616 Query 61154 ACATGAATGACTGGGAGCGTTT--ATCGAGCGGTGAACAACATTTCATTAAACATGTGTT 61211 | | || ||| | | | || | | | | ||||| || || ||||| || Sbjct 48615 ATTTACGAGATTGGAATTCTCTCCATTCATCAGAG--CAACACTTTATATCCCATGTTTT 48558 Query 61212 GGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCA 61271 ||| || ||||| ||||| || || ||||| ||||| || || | ||||| Sbjct 48557 GGCATTTTTTGCAGCTTCTGATGGCATCGTGAATGAAAACTTGGCAGCTCGTTTTAGTAC 48498 Query 61272 GGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331 || || ||||| | || |||||||||||||| || || ||||| || ||||| ||||| Sbjct 48497 TGAAGTTCAAGTACCCGAAGCGCGTTGTTTCTATGGTTTTCAGATGGCTATGGAAAATGT 48438 Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAA---CG 61388 || ||||| |||||| | | || |||||||| || || | || ||| ||| || Sbjct 48437 ACATTCGGAAATGTACGCTTTACTTATCGATACTTATATTCGAGATATGGCAGAAAAGCG 48378 Query 61389 TGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGC 61448 | || |||||| | |||||||| | | | ||||| ||||||||||||| | Sbjct 48377 T---CGTTTGTTCTACGCCATCGAAAATCTTACTTGTGTGAAAAAGAAAGCGGATTGGTC 48321 Query 61449 CTTCAATTGGATCACCA-GTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGG 61507 || || ||||| || | || | | || | |||| ||| || || | || ||||| | Sbjct 48320 TTTAAAATGGAT-ACGATGTTCCA--GC-AGTTTTGCTGAGCGTTTAGTTGCCTTTGCAG 48265 Query 61508 TGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTG 61567 || || || |||| || ||| || ||| | || |||||||| |||||||| | Sbjct 48264 CAGTAGAAGGGATATTCTTTTCTGGTTCTTTTTGTTCCATATTTTGGTTAAAGAAACGGG 48205 Query 61568 GACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATT 61627 | | ||||| ||||| || ||| |||||||||||||||||| || || ||| |||||| Sbjct 48204 GCTTGATGCCTGGTCTTACTTTCTCCAATGAGTTGATATCACGAGATGAAGGCTTGCATT 48145 Query 61628 GTGATTTTGCT 61638 |||| |||||| Sbjct 48144 GTGAATTTGCT 48134 >seq19 Length=190679 Score = 114 bits (126), Expect = 1e-20 Identities = 447/698 (64%), Gaps = 10/698 (1%) Strand=Plus/Minus Query 66232 TTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACA 66291 ||| || | ||| || || ||||| || | ||||||||| || | || || |||| Sbjct 26360 TTCATACTTTTCATAAAGTTGTTCAAATGCTTCACCCCAACAATCAGCCAAACCTGGAGC 26301 Query 66292 CTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATC 66351 | | ||||| | | ||| | |||||| |||||| | |||||||| ||| Sbjct 26300 TTCATTGGGACAAAATAAACTCCATTTCTCATCCTTTTCTACTCTTTTCATAAATAAATC 26241 Query 66352 AGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTT 66411 || | ||| | | || || | ||| |||||||| | || || | || ||||| || Sbjct 26240 GGGAACCCATAAACCATAAAACAAATCTCGTGCTCGATTTTCTTCCTTTCCATGATTCTT 26181 Query 66412 GCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGA 66471 | ||| || | || ||||| || ||||||||||| || |||| || || || || | Sbjct 26180 TCTCAAATCTAAAAATTCAAAAATATCGGCATGCCAAGGCTCCAAATAAATAGCAAAAGC 26121 Query 66472 GCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAA 66531 || | | ||| || || ||||| || || || | || || || || || || | Sbjct 26120 TCCTTTTCTTTTTCCTCCTCCTTGATCCACATATCTTGCAGTATCATTAAATACTCGAAG 26061 Query 66532 CATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCG-ATGGGGGATCCTCGTGCCC 66590 ||| || || | || ||||| | |||||||| || ||| || ||| ||| | Sbjct 26060 CATAGGAACAATGCCATTAGAAGTTCCATTGGTACC-TCGAATATAAGATTTGGTTGCAC 26002 Query 66591 GTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGG 66650 ||||||| ||||| || ||||||||||| || | || || || | ||||| Sbjct 26001 GTATATCATGAACTGCCAATCCAATACCACCAGCACTTTTAGAAATAACTGCACATCTTT 25942 Query 66651 CCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAAC 66710 | || | || || ||||||||||| | | || || | ||| | || || Sbjct 25941 TTAAAGTATCATAAATTCCTTCAATGGAGTCTTCAGTCATAGTTAATAGGAAACAAGAGG 25882 Query 66711 TAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAAT 66770 | || ||| | || || | || ||| | || |||| ||| || |||||||| | Sbjct 25881 ATAACTGAGGTCTTGGAGTACCCGCATTGAATAAAGTAGGTGAAGCATGAGTAAAGTATT 25822 Query 66771 GGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGA 66830 |||||||| |||| || ||||| | || || || | || || ||||| || | Sbjct 25821 TTCGAGACATATAATCATAAGTCTCCAATACTGCTTCCAAGTCATCCTTGTGAATACCAA 25762 Query 66831 GTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCA----GCCGATCCTTGATATGC 66886 || || ||||| | | ||| || ||||| | || ||| |||| | | | Sbjct 25761 CAGCTACTCTCATCAACATATGTTGTGGTCGTTCTATCACTTTGCC-ATCC---ACACGT 25706 Query 66887 ATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTA 66924 | ||| ||||| ||||| | || |||| |||||||| Sbjct 25705 AATAAATAGGAACGTTCTAAAGTTTTGAATCCAAAGTA 25668 Score = 82.4 bits (90), Expect = 6e-11 Identities = 82/104 (79%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 65823 CTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTC-AGGTACA 65881 ||||||| ||||| || || ||||||||||| ||||||||| |||| | || || ||| Sbjct 26878 CTTGAACACCAATTCCTATAGGACGATGACGTAAATTGGAA-GTCTTGGCTTGAGTTACG 26820 Query 65882 GGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCAC 65925 || || |||||||||||||| || ||||| ||||| || || Sbjct 26819 GGATAATAATTGATATCGATGATTTTGTTCAAGTTGCGAGTAAC 26776 >seq26 Length=183063 Score = 105 bits (116), Expect = 5e-18 Identities = 301/454 (66%), Gaps = 8/454 (2%) Strand=Plus/Minus Query 61192 CATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAAT 61251 ||||||||| || || ||||| |||||||| |||| ||||| || || ||||| Sbjct 77542 CATTTCATTTCTCACGTATTGGCTTTCTTTGCATCTTCCGACGGAATTGTTTTGGAGAAC 77483 Query 61252 TTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTC 61311 | ||| | || | || || || | | || || || ||||| || || || Sbjct 77482 CTTGCAGAAAGATTTTGTCGTGATGTCCAGATTCCAGAAGCACGATGTTTTTATGGATTT 77423 Query 61312 CAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATC 61371 || || || ||||| ||| | || ||||| | || | |||| |||||||| || || Sbjct 77422 CAAATAGCAATGGAAAATATTCATTCGGAAACTTATTCTCTTCTTATCGATACTTATATT 77363 Query 61372 AGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACG-ATACCGGCGGTGA 61429 | || || | || | | || || || | || || || ||| || || | Sbjct 77362 CGAGATGCTCAAGAAAAG-GCTCGTTTATTTGAAGCAATGGA-ACGTATTCCTTGTATTG 77305 Query 61430 AGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAAC 61489 || || || | ||||| || | |||||| || | | | || | |||| ||| | Sbjct 77304 AGAAAAAGGCTCAGTGGGCTTTAAGATGGATC--CAATCCTCTGCCT-CTTTTGCTGAGC 77248 Query 61490 GATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCT 61549 | || |||||||||| | || ||||| ||||||| ||| || ||| | || | Sbjct 77247 GTTTAGTGGCATTTGCTGCTGTAGAGGGAATATTTTTTTCTGGTTCTTTTTGTTCCATAT 77188 Query 61550 TTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCAC 61609 |||||||||| || | ||||||||||| || |||||||| |||||| | || |||| Sbjct 77187 TTTGGTTGAAAAAGAGAGGACTTATGCCAGGATTGACCTTCTCTAATGAGCTTATTTCAC 77128 Query 61610 GCGACGAGGGCATGCATTGTGATTTTGC-TGTTT 61642 | || || || |||||||||| ||||| ||||| Sbjct 77127 GTGATGAAGGTTTGCATTGTGACTTTGCATGTTT 77094 Score = 87.8 bits (96), Expect = 1e-12 Identities = 126/175 (72%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 61759 ATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTG 61818 || || |||||| ||| | ||| ||||||||||| |||||||| || ||| ||||| Sbjct 76932 ATAGGAATGAATAGTGATATGATGAGTCAGTATATTGAGTTTGTTGCGGATCGTTTGTTG 76873 Query 61819 GTCGATTTGGG-TATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACAT 61877 || | |||||| ||||| || | | | | ||| || ||||||| ||||| | Sbjct 76872 GTTGCTTTGGGATATGAGAAATATTTCCAGT-CTCGAAATCCGTTTGATTGGATGGAACT 76814 Query 61878 GATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAA 61932 ||||| |||| || ||||| || ||||| ||||| || || || || |||||| Sbjct 76813 CATTTCTTTGGAAGGAAAGACCAACTTTTTTGAGAAGCGAGTGGGAGAATATCAA 76759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397565901959120