Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq36 480 9e-131 >seq36 Length=158315 Score = 480 bits (532), Expect = 9e-131 Identities = 710/1003 (71%), Gaps = 2/1003 (0%) Strand=Plus/Plus Query 161506 AGGGGGTGGTTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGC 161565 || ||||||||||| | |||| || ||||| ||||| ||||| || || ||| |||| Sbjct 39768 AGAGGGTGGTTCGACTTAGTTGATGATTGGCTAAAACGTGATCGATTTGTCTTTATTGGA 39827 Query 161566 TGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGC 161625 ||||| || | || |||||||| | | ||||| ||| | || | ||| |||| || Sbjct 39828 TGGTCAGGTTTGCTACTTTTTCCATGTTCATATCTAGCTCTAGGTGCCTGGTTTACAGGT 39887 Query 161626 ACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCA 161685 || ||||| | ||| |||||||| ||||| | ||| ||| ||| | || || Sbjct 39888 ACAACTTTTGTTACTTCTTGGTATACGCATGGTTTAGCTTCTTCTTATTTAGAAGGATGT 39947 Query 161686 AATTTTCTTACAGCGGCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT 161745 |||||| | || || ||||| | ||| || | |||||| || || | | || Sbjct 39948 AATTTTTTAACCGCTGCAGTATCAAGTCCTGCAAATAGTATGGGACACTCATTATTATTT 40007 Query 161746 CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGG 161805 | ||||| || || |||||||| ||||| || ||| ||| |||| || || ||| Sbjct 40008 TTATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTCTTTGG 40067 Query 161806 AATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTT-CGTCAGTTTGA 161864 | |||| || | || || ||||| || |||| || || || || ||||| ||||| Sbjct 40068 ACTTTTACTGCTTTACATGGTGCTTTTGCCTTGATAGG-TTTTTGTTTGCGTCAATTTGA 40126 Query 161865 ACTTGCTCGTCTTATCGGTATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGC 161924 | | || | | |||| || | || |||||||| || ||||| || || || ||||| Sbjct 40127 AATAGCCAGATTAGTCGGAATTAGGCCATACAATGCAATAGCTTTTTCAGGACCAATTGC 40186 Query 161925 TGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGCC 161984 |||||||| || ||||| || ||||| || || || | ||||| || || || Sbjct 40187 AGTTTTTGTTTCAGTATTTCTTATTTATCCACTTGGGCAAGCTAGTTGGTTTTTTGCTCC 40246 Query 161985 ATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAATTG 162044 ||||| ||||| ||||| || | || | | || ||||||||||||| ||||| Sbjct 40247 TAGTTTTGGAGTTGCAGCTATCTTTCGATTTATTTTATTTTTACAAGGTTTCCATAATTG 40306 Query 162045 GACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTC 162104 ||| | ||||| || || ||||||||||| || || || | || || || || || | Sbjct 40307 GACTTTAAATCCATTTCATATGATGGGTGTTGCTGGAATACTCGGAGGAGCATTACTTTG 40366 Query 162105 TGCTATTCACGGTGTGACTGTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAATAC 162164 ||||||||| || | |||||| || || || | | | ||||||| ||| || ||||| Sbjct 40367 TGCTATTCATGGAGCGACTGTAGAGAATACATTATTCGAAGATGGCGAAGCTGCTAATAC 40426 Query 162165 TTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCG 162224 ||||| ||||||| | || ||| ||||| ||||| || |||||||| || || || Sbjct 40427 TTTCAGGGCTTTTACACCAACACAATCAGAGGAAACTTATTCAATGGTTACGGCTAATCG 40486 Query 162225 TTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTAT 162284 ||| |||||||| || || ||| |||| ||| ||| || | ||| | ||||| ||||| Sbjct 40487 TTTTTGGTCACAAATTTTTGGTGTTGCATTTTCTAACAAAAGATGGCTACATTTTTTTAT 40546 Query 162285 GCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCT 162344 ||| || || || || | || | |||||||| ||||| ||||| || ||||| || | Sbjct 40547 GCTATTTGTGCCAGTTACAGGATTATGGACAAGCTCTATTGGTATCATAGGACTTGCATT 40606 Query 162345 TAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATT 162404 ||| | ||||| || || ||||| ||||| || | ||||| || ||||| || ||||| Sbjct 40607 AAATTTACGTGCATATGATTTTGTCTCTCAAGAATTACGTGCCGCAGAGGACCCAGAATT 40666 Query 162405 TGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCACC 162464 ||| || || || || || ||| | || | ||||||||| | | |||||| ||||| | Sbjct 40667 TGAGACTTTTTATACTAAAAATTTACTTCTAAATGAAGGTATAAGAGCATGGATGGCAAC 40726 Query 162465 AGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTT 162507 | |||||||| ||||| || ||||||||||| ||||| ||| Sbjct 40727 ACAAGATCAACCACATGAAAATTTTGTATTCCCAGAGGAGGTT 40769 Score = 441 bits (488), Expect = 8e-119 Identities = 670/951 (70%), Gaps = 2/951 (0%) Strand=Plus/Minus Query 159830 AACCGCCTCTATGTCGGTTGGTTCGGCGTCCTGATGATCCCAACTCTGTTGGCAGCAACT 159889 || || ||||| | |||||||| || || | |||||||| || | | |||| || Sbjct 27738 AATCGTCTCTACATAGGTTGGTTTGGAGTATTAATGATCCCTACATTACTAACAGCTAC- 27680 Query 159890 ATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGA 159948 ||||| || || | | || || |||||||| || || || || || || || | || Sbjct 27679 ATCTGTATTTATAATTGGATTTATAGCTGCTCCACCAGTTGATATAGACGGTATTAGAGA 27620 Query 159949 ACCCGTCGCTGGTTCACTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTC 160008 ||| || | || ||| | | || || || || || || ||||||| |||| || | Sbjct 27619 ACCAGTTTCAGGATCATTGTTATATGGAAATAATATTATAACTGGTGCTATTGTACCTAC 27560 Query 160009 TTCCAACGCAATTGGTCTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTG 160068 || || ||||| || | || |||||||| ||||||||||| ||||| | || || || Sbjct 27559 ATCTAATGCAATAGGAATACATTTCTATCCTATTTGGGAAGCAGCATCTTTAGATGAATG 27500 Query 160069 GCTCTATAACGGTGGTCCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGC 160128 ||| ||||| || ||||||| || | |||| || |||||| | || || || | ||| Sbjct 27499 GCTATATAATGGCGGTCCTTATGAATTAATAGTTTTGCACTTCTTTATTGGAATTTGTGC 27440 Query 160129 CTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGT 160188 |||||||| ||||| |||||| | || ||||| || |||||||| ||||| || Sbjct 27439 ATATATGGGACGTGAATGGGAATTAAGCTATCGTCTTGGAATGCGTCCTTGGATAGCCGT 27380 Query 160189 TGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCA 160248 || | ||| ||||| || ||||| || | |||||||| | |||| || | || || Sbjct 27379 AGCTTTCTCAGCTCCTGTTGCTGCAGCCACAGCTGTATTTATTATCTATCCTATTGGACA 27320 Query 160249 GGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGT 160308 ||| ||| || |||| |||||| | ||||| |||||||||||||| | |||| | || Sbjct 27319 AGGTAGTTTTTCAGATGGTATGCCATTAGGTATTTCTGGTACTTTTAATTTTATGTTAGT 27260 Query 160309 ATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGT 160368 |||||||| ||||| ||||| | ||||||||||| || ||| | ||||||||||| || Sbjct 27259 TTTCCAAGCTGAACATAATATTTTAATGCATCCGTTTCATATGATGGGTGTTGCTGGTGT 27200 Query 160369 ATTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAG 160428 ||| || || || | || ||| ||||| || ||||| || ||||| ||| | | | Sbjct 27199 ATTTGGAGGTTCATTATTTAGTGCAATGCACGGCTCTCTTGTAACTTCAAGTTTGATACG 27140 Query 160429 AGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGAC 160488 || || ||||| | |||||| ||| ||||||| || || || ||||| | || || Sbjct 27139 TGAAACAACAGAGAATGAGTCTGCAAACAATGGTTATAAATTTGGCCAAGAATATGAAAC 27080 Query 160489 TTACAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTT 160548 ||| |||||||| || || ||||| || || || | || || |||||||||||| ||| Sbjct 27079 TTATAACATCGTTGCTGCTCATGGTTATTTTGGAAGATTAATTTTCCAATATGCAAGCTT 27020 Query 160549 TAACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTT 160608 ||| || |||||||| | || |||||| | ||| ||||| || || | || ||| | Sbjct 27019 TAATAATTCACGCTCATTACATTTCTTCTTAGCTTTATGGCCAGTAGTATGTATTTGGCT 26960 Query 160609 CACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTC 160668 ||| | | ||| | || |||||||| || | ||||| || || || || || || Sbjct 26959 CACATCTTTAGGTATCAGCACAATGGCATTTAACTTAAATGGATTTAATTTTAATCAATC 26900 Query 160669 CATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTGG 160728 | | || |||||| ||| | || |||||||| || | | || || || Sbjct 26899 TGTTGTTGATTCTCAAGGAAGAGTAATTAATACTTGGGCTGATATTTTAAATCGTGCAAA 26840 Query 160729 TCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAACTTCCCTCTCGA 160779 | | || || ||||| ||||| || ||||| || || ||||| ||||| || Sbjct 26839 TTTAGGAATAGAAGTAATGCATGAACGTAATGCACATAACTTTCCTCTAGA 26789 Score = 140 bits (154), Expect = 4e-28 Identities = 174/236 (74%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 160960 GATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGT 161019 |||||||||||| | | || || ||||| ||| ||| | || |||||| || ||| Sbjct 69671 GATGATCAATATATATTAGATGCAGCTGAAGAACAAGGATTAGATCTACCCTATTCTTGT 69730 Query 161020 CGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACT-GTAGATCAATC 161078 | || || || || ||||||||||| ||||| | || || | || ||||||||||| Sbjct 69731 AGAGCAGGAGCATGTTCTACTTGTGCAGGTAA-ACTGTTAGAAGGACAAGTAGATCAATC 69789 Query 161079 TGATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGC 161138 |||||| || || || ||||||||||| | || ||||||||||||| || || ||||| Sbjct 69790 TGATCAGTCATTTCTAGATGATGATCAGGTAAAAGCAGGATTTGTCCTAACATGTGTTGC 69849 Query 161139 TTATCCCACTTCTGATGTAACTATTCTTGCCGAGCAAGAAGAGTCTCTTTACTAAA 161194 ||||| |||| | ||| ||| ||| | | | |||||||| || | || |||| Sbjct 69850 ATATCCTACTTGTAATGCAACAATTTTAACTCATCAAGAAGAATCATTATATTAAA 69905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551373015677400