Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq36 489 2e-133 >seq36 Length=158315 Score = 489 bits (542), Expect = 2e-133 Identities = 731/1031 (71%), Gaps = 6/1031 (1%) Strand=Plus/Plus Query 189977 GAGGGAATGGTTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGG 190036 ||||| ||||| ||| | ||||||| ||||| ||||| ||||| ||||||||| | || Sbjct 39769 GAGGG--TGGTTCGACTTAGTTGATGATTGGCTAAAACGTGATCGATTTGTCTTTATTGG 39826 Query 190037 TTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGG 190096 ||||| || || || |||||||| | | ||||| || | |||| |||| |||| || Sbjct 39827 ATGGTCAGGTTTGCTACTTTTTCCATGTTCATATCTAGCTCTAGGTGCCTGGTTTACAGG 39886 Query 190097 CACGACGTTTGCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGC 190156 || || |||| ||| ||||| || || || | || | ||| | || || Sbjct 39887 TACAACTTTTGTTACTTCTTGGTATACGCATGGTTTAGCTTCTTCTTATTTAGAAGGATG 39946 Query 190157 TAATTTTCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCT 190216 ||||||| | || || || || |||| ||||| || |||||| || || || || | Sbjct 39947 TAATTTTTTAACCGCTGCAGTATCAAGTCCTGCAAATAGTATGGGACACTCA-TTATTAT 40005 Query 190217 ACTT-TGGGGTCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCT 190275 || ||||| || ||| ||||||| ||||| || ||| ||| |||| || || | Sbjct 40006 TTTTATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTCTTT 40065 Query 190276 GGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTT-CGTCAGTTT 190334 || ||||| || | || || ||||| || | || || || || || ||||| ||| Sbjct 40066 GGACTTTTACTGCTTTACATGGTGCTTTTGCCTTGATAGGTTTT-TGTTTGCGTCAATTT 40124 Query 190335 GAACTGGCACGTCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATC 190394 ||| | || | | |||| || | || |||||||| || || || || || || || Sbjct 40125 GAAATAGCCAGATTAGTCGGAATTAGGCCATACAATGCAATAGCTTTTTCAGGACCAATT 40184 Query 190395 GCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCG 190454 || ||||||||| || ||||| || || || || || ||| | |||||||| || || Sbjct 40185 GCAGTTTTTGTTTCAGTATTTCTTATTTATCCACTTGGGCAAGCTAGTTGGTTTTTTGCT 40244 Query 190455 CCATCCTTCGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAAC 190514 || || || || ||||| ||||| || || | | || || || || |||||||| Sbjct 40245 CCTAGTTTTGGAGTTGCAGCTATCTTTCGATTTATTTTATTTTTACAAGGTTTCCATAAT 40304 Query 190515 TGGACGCTGAACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTG 190574 ||||| | || || || || |||||||||||||| || || || ||||||||| |||| Sbjct 40305 TGGACTTTAAATCCATTTCATATGATGGGTGTTGCTGGAATACTCGGAGGAGCATTACTT 40364 Query 190575 TCAGCAATCCATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAAC 190634 | || || ||||| | ||||||||||||||| || | |||||||| ||| || || Sbjct 40365 TGTGCTATTCATGGAGCGACTGTAGAGAATACATTATTCGAAGATGGCGAAGCTGCTAAT 40424 Query 190635 ACGTTTAAAGCATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAAC 190694 || || | || || | |||||| || || || ||||| ||||| || || || Sbjct 40425 ACTTTCAGGGCTTTTACACCAACACAATCAGAGGAAACTTATTCAATGGTTACGGCTAAT 40484 Query 190695 CGTTTCTGGTCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTT 190754 ||||| ||||| ||||| ||||||||||| || ||| || || ||| | ||||| ||| Sbjct 40485 CGTTTTTGGTCACAAATTTTTGGTGTTGCATTTTCTAACAAAAGATGGCTACATTTTTTT 40544 Query 190755 ATGCTCTTTGTTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCT 190814 ||||| ||||| || |||| || | ||||| || || ||||| || || ||||| Sbjct 40545 ATGCTATTTGTGCCAGTTACAGGATTATGGACAAGCTCTATTGGTATCATAGGACTTGCA 40604 Query 190815 CTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAG 190874 | || | ||||| ||||| ||||| || ||||| | | || ||||| || ||||| Sbjct 40605 TTAAATTTACGTGCATATGATTTTGTCTCTCAAGAATTACGTGCCGCAGAGGACCCAGAA 40664 Query 190875 TTCGAGACTTTTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCA 190934 || ||||||||||| || |||||| ||||| | ||||||||| | | ||||| ||||| Sbjct 40665 TTTGAGACTTTTTATACTAAAAATTTACTTCTAAATGAAGGTATAAGAGCATGGATGGCA 40724 Query 190935 CCTGTTGATCAACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAAC 190994 | |||||||| ||||| ||||||||||| ||||| || || || ||| | || || Sbjct 40725 ACACAAGATCAACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAAT 40784 Query 190995 GCTCTGTGATA 191005 || || | ||| Sbjct 40785 GCCCTTTAATA 40795 Score = 471 bits (522), Expect = 5e-128 Identities = 681/958 (71%), Gaps = 2/958 (0%) Strand=Plus/Minus Query 188878 AACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCGCTGCAACC 188937 || ||||| || | |||||||| || || | ||||||||||| | || | || || Sbjct 27738 AATCGTCTCTACATAGGTTGGTTTGGAGTATTAATGATCCCTACATTACTAACAGCTAC- 27680 Query 188938 ATCTGC-TTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCGA 188996 ||||| || || | | ||| | ||||| || || || || || || || || | || Sbjct 27679 ATCTGTATTTATAATTGGATTTATAGCTGCTCCACCAGTTGATATAGACGGTATTAGAGA 27620 Query 188997 ACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTTC 189056 ||| || | || ||| | | |||||||| || || || |||||||| |||| ||| | Sbjct 27619 ACCAGTTTCAGGATCATTGTTATATGGAAATAATATTATAACTGGTGCTATTGTACCTAC 27560 Query 189057 ATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTG 189116 ||| || ||||| || | || ||||| || || |||||||| || || | ||||| || Sbjct 27559 ATCTAATGCAATAGGAATACATTTCTATCCTATTTGGGAAGCAGCATCTTTAGATGAATG 27500 Query 189117 GCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACGC 189176 ||| || || || ||||||| || | |||| || |||||| | || || || | || Sbjct 27499 GCTATATAATGGCGGTCCTTATGAATTAATAGTTTTGCACTTCTTTATTGGAATTTGTGC 27440 Query 189177 CTACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGCAT 189236 || ||||| ||||| |||||| | || ||||| || |||||||||||||| | | Sbjct 27439 ATATATGGGACGTGAATGGGAATTAAGCTATCGTCTTGGAATGCGTCCTTGGATAGCCGT 27380 Query 189237 TGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCA 189296 |||| ||| || |||||||| ||||| | || || ||| | |||||||| |||| || Sbjct 27379 AGCTTTCTCAGCTCCTGTTGCTGCAGCCACAGCTGTATTTATTATCTATCCTATTGGACA 27320 Query 189297 AGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGT 189356 |||| ||| || || | ||||| || ||||| ||| || || || | ||| | || Sbjct 27319 AGGTAGTTTTTCAGATGGTATGCCATTAGGTATTTCTGGTACTTTTAATTTTATGTTAGT 27260 Query 189357 CTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGT 189416 |||||||| || || || || | ||||| || || || ||| |||| || || ||||| Sbjct 27259 TTTCCAAGCTGAACATAATATTTTAATGCATCCGTTTCATATGATGGGTGTTGCTGGTGT 27200 Query 189417 CTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCG 189476 || || |||||| | || |||||||| || || || || || || || | || Sbjct 27199 ATTTGGAGGTTCATTATTTAGTGCAATGCACGGCTCTCTTGTAACTTCAAGTTTGATACG 27140 Query 189477 TGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAAC 189536 |||||| || || | ||||| ||| ||||||| || ||||| |||||| | ||||| Sbjct 27139 TGAAACAACAGAGAATGAGTCTGCAAACAATGGTTATAAATTTGGCCAAGAATATGAAAC 27080 Query 189537 GTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTT 189596 || |||||||||||||||||||| ||||| || | | || |||||||||||| || Sbjct 27079 TTATAACATCGTTGCTGCTCATGGTTATTTTGGAAGATTAATTTTCCAATATGCAAGCTT 27020 Query 189597 CAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGTT 189656 || || || || ||| | || |||||| | ||| |||||||| || |||| ||| | Sbjct 27019 TAATAATTCACGCTCATTACATTTCTTCTTAGCTTTATGGCCAGTAGTATGTATTTGGCT 26960 Query 189657 TACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAATCAATC 189716 || | | || ||||||| |||||||| ||| | ||||| || || || |||||||| Sbjct 26959 CACATCTTTAGGTATCAGCACAATGGCATTTAACTTAAATGGATTTAATTTTAATCAATC 26900 Query 189717 CATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGG 189776 || ||||| |||||| | || | || || ||||| || || | || ||||| Sbjct 26899 TGTTGTTGATTCTCAAGGAAGAGTAATTAATACTTGGGCTGATATTTTAAATCGTGCAAA 26840 Query 189777 TCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTGATCTGGCA 189834 | | || || ||||| |||||||| ||||| || || ||||| ||||| ||| | ||| Sbjct 26839 TTTAGGAATAGAAGTAATGCATGAACGTAATGCACATAACTTTCCTCTAGATTTAGCA 26782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634076568042000