Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq36 565 3e-156 >seq36 Length=158315 Score = 565 bits (626), Expect = 3e-156 Identities = 750/1033 (73%), Gaps = 6/1033 (1%) Strand=Plus/Plus Query 163874 ACAAAGGGGGTGGTTCGATGTCCTGGACGACTGGCTTAAACGAGATCGCTTTGTCTTTGT 163933 |||||| ||||||||||| | | || || ||||| ||||| ||||| ||||||||| | Sbjct 39764 ACAAAGAGGGTGGTTCGACTTAGTTGATGATTGGCTAAAACGTGATCGATTTGTCTTTAT 39823 Query 163934 GGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTAC 163993 || ||||| || || || |||||||| | | ||||| || | |||| |||| |||| Sbjct 39824 TGGATGGTCAGGTTTGCTACTTTTTCCATGTTCATATCTAGCTCTAGGTGCCTGGTTTAC 39883 Query 163994 TGGTACAACGTTTGTTACCAGTTGGTACACCCACGGTCTCGCGTCTAGTTACCTTGAGGG 164053 |||||||| |||||||| |||||| || || ||| | || ||| ||| | || || Sbjct 39884 AGGTACAACTTTTGTTACTTCTTGGTATACGCATGGTTTAGCTTCTTCTTATTTAGAAGG 39943 Query 164054 TGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCT 164113 |||||| | || || || || |||| ||||| || |||||| || || || | Sbjct 39944 ATGTAATTTTTTAACCGCTGCAGTATCAAGTCCTGCAAATAGTATGGGACACTC-ATTAT 40002 Query 164114 TCTACTT-TGGGGTCCTGAGTCTCAGGGGGACTTCATTAGGTGGTGCCAACTTGGGGGAC 164172 | | || ||||| || || |||| || || || | ||| ||||| ||| |||| || | Sbjct 40003 TATTTTTATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTC 40062 Query 164173 TCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGATCGGTTTCATGCTT-CGGCAG 164231 | ||| ||||| || || || || |||| || |||| ||||| || || || || Sbjct 40063 TTTGGACTTTTACTGCTTTACATGGTGCTTTTGCCTTGATAGGTTT-TTGTTTGCGTCAA 40121 Query 164232 TTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCG 164291 |||||||| || | | || || || | || |||||||| || || || || || || Sbjct 40122 TTTGAAATAGCCAGATTAGTCGGAATTAGGCCATACAATGCAATAGCTTTTTCAGGACCA 40181 Query 164292 ATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTT 164351 ||||| || ||||| || || ||||| || || || |||||| |||||||||| ||| Sbjct 40182 ATTGCAGTTTTTGTTTCAGTATTTCTTATTTATCCACTTGGGCAAGCTAGTTGGTTTTTT 40241 Query 164352 GCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCAT 164411 || || ||||| || || || ||||| |||| | || || | |||||||||||| Sbjct 40242 GCTCCTAGTTTTGGAGTTGCAGCTATCTTTCGATTTATTTTATTTTTACAAGGTTTCCAT 40301 Query 164412 AACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTT 164471 || ||||| | || || || ||||||||||||||||| || || || || || || | Sbjct 40302 AATTGGACTTTAAATCCATTTCATATGATGGGTGTTGCTGGAATACTCGGAGGAGCATTA 40361 Query 164472 CTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGTGAACAATCA 164531 || |||||||||||||| || || ||||||||||| || || |||||||| ||| | Sbjct 40362 CTTTGTGCTATTCATGGAGCGACTGTAGAGAATACATTATTCGAAGATGGCGAAGCTGCT 40421 Query 164532 AATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCC 164591 |||||||||| ||| || || || ||| || || ||||| || ||||| || || Sbjct 40422 AATACTTTCAGGGCTTTTACACCAACACAATCAGAGGAAACTTATTCAATGGTTACGGCT 40481 Query 164592 AACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTC 164651 || || || ||||| || ||||||||| |||| || || || | ||| | || || Sbjct 40482 AATCGTTTTTGGTCACAAATTTTTGGTGTTGCATTTTCTAACAAAAGATGGCTACATTTT 40541 Query 164652 TTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTC 164711 |||||||| ||||| || || | ||| | |||||||| |||||||||||||| || || Sbjct 40542 TTTATGCTATTTGTGCCAGTTACAGGATTATGGACAAGCTCTATTGGTATCATAGGACTT 40601 Query 164712 GCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTA-GAGCAGCAGAGGATCC 164770 ||| | ||| | ||||| ||||||||||| ||||| || |||| | || |||||||| || Sbjct 40602 GCATTAAATTTACGTGCATATGATTTTGTCTCTCAAGA-ATTACGTGCCGCAGAGGACCC 40660 Query 164771 TGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGAAGGACTCCGTGCCTGGAT 164830 ||||||||||| || ||||| || || | || || |||||||| | | || ||||| Sbjct 40661 AGAATTTGAGACTTTTTATACTAAAAATTTACTTCTAAATGAAGGTATAAGAGCATGGAT 40720 Query 164831 GGCTCCAGTAGACCAGCCACACGAATCGTTTGTATTTCCAGAGGAAGTTCTTCCGAGAGG 164890 ||| || ||| || ||||| ||| |||||||| |||||||| ||| | || | || Sbjct 40721 GGCAACACAAGATCAACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGG 40780 Query 164891 TAACGCACTCTAA 164903 || || || ||| Sbjct 40781 AAATGCCCTTTAA 40793 Score = 520 bits (576), Expect = 1e-142 Identities = 694/959 (72%), Gaps = 4/959 (0%) Strand=Plus/Minus Query 160593 ACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCA 160652 ||| | |||||||| ||| | |||||||| || || | |||||||| || | | || Sbjct 27744 ACAGAAAATCGTCTCTACATAGGTTGGTTTGGAGTATTAATGATCCCTACATTACTAACA 27685 Query 160653 GCAACCGTCTGC-TTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTAT 160711 || || |||| ||||| | || || | |||||||| || || || || |||||||| Sbjct 27684 GCTACA-TCTGTATTTATAATTGGATTTATAGCTGCTCCACCAGTTGATATAGACGGTAT 27626 Query 160712 CCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGT 160771 | ||||| ||| | || ||| || | |||||||| || || || ||||||| |||| Sbjct 27625 TAGAGAACCAGTTTCAGGATCATTGTTATATGGAAATAATATTATAACTGGTGCTATTGT 27566 Query 160772 TCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGA 160831 ||| | || || ||||| || | || ||||| || ||||||||||| |||||| | || Sbjct 27565 ACCTACATCTAATGCAATAGGAATACATTTCTATCCTATTTGGGAAGCAGCATCTTTAGA 27506 Query 160832 TGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGATCGGCAT 160891 ||||||||| || ||||| |||||||| || | | || || |||||| | || || || Sbjct 27505 TGAATGGCTATATAATGGCGGTCCTTATGAATTAATAGTTTTGCACTTCTTTATTGGAAT 27446 Query 160892 CTTCTGC-TACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGA 160950 || ||| || ||||| || || |||||| | ||| || || || ||||| || |||| Sbjct 27445 -TTGTGCATATATGGGACGTGAATGGGAATTAAGCTATCGTCTTGGAATGCGTCCTTGGA 27387 Query 160951 TCTGCGTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTT 161010 | ||| || | || || ||||||||||| || | || ||||| | |||||||| Sbjct 27386 TAGCCGTAGCTTTCTCAGCTCCTGTTGCTGCAGCCACAGCTGTATTTATTATCTATCCTA 27327 Query 161011 TCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCA 161070 | || |||||| ||| || ||||||||||| | ||||| |||||||| || || || | Sbjct 27326 TTGGACAAGGTAGTTTTTCAGATGGTATGCCATTAGGTATTTCTGGTACTTTTAATTTTA 27267 Query 161071 TGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTG 161130 || | || ||||| || ||||| || || | ||||| || || || ||| ||||||||| Sbjct 27266 TGTTAGTTTTCCAAGCTGAACATAATATTTTAATGCATCCGTTTCATATGATGGGTGTTG 27207 Query 161131 CTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCC 161190 ||||||| || || ||||| | || |||||||| || || || || ||||| Sbjct 27206 CTGGTGTATTTGGAGGTTCATTATTTAGTGCAATGCACGGCTCTCTTGTAACTTCAAGTT 27147 Query 161191 TGGTTCGTGAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAG 161250 || | |||||||| || ||||| ||||| ||| ||||||| || ||||| |||||| Sbjct 27146 TGATACGTGAAACAACAGAGAATGAGTCTGCAAACAATGGTTATAAATTTGGCCAAGAAT 27087 Query 161251 AAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACG 161310 | || || || |||||||| |||||||||||||| || || | | || |||||||| | Sbjct 27086 ATGAAACTTATAACATCGTTGCTGCTCATGGTTATTTTGGAAGATTAATTTTCCAATATG 27027 Query 161311 CTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTA 161370 | ||| || || || || || || || |||||| | || |||||| || || ||| Sbjct 27026 CAAGCTTTAATAATTCACGCTCATTACATTTCTTCTTAGCTTTATGGCCAGTAGTATGTA 26967 Query 161371 TCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAACTTCA 161430 | ||| |||| | | ||| || ||| |||||||| ||| | || ||||| || || | Sbjct 26966 TTTGGCTCACATCTTTAGGTATCAGCACAATGGCATTTAACTTAAATGGATTTAATTTTA 26907 Query 161431 ACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAATC 161490 | || || | | ||| ||| || | ||| | || || |||||||| || | |||| Sbjct 26906 ATCAATCTGTTGTTGATTCTCAAGGAAGAGTAATTAATACTTGGGCTGATATTTTAAATC 26847 Query 161491 GTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGAT 161549 |||| || | || || ||||||||||| || |||||||| || ||||| ||||| ||| Sbjct 26846 GTGCAAATTTAGGAATAGAAGTAATGCATGAACGTAATGCACATAACTTTCCTCTAGAT 26788 Score = 114 bits (126), Expect = 1e-20 Identities = 132/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 50096 ATTTTGGATGCTGCAGAAGAACAAGGCGTAGACATCAATTATTCTTGTCGTGCAGGAGCA 50155 || || ||||| || ||||||||||| |||| | ||||||||| | ||||||||| Sbjct 69683 ATATTAGATGCAGCTGAAGAACAAGGATTAGATCTACCCTATTCTTGTAGAGCAGGAGCA 69742 Query 50156 TGTTCCTCTTGTGCTGGTAAAATCATTGAGGGTACTGTTGACCAGGAAGATCAATCATTT 50215 ||||| ||||||| |||||| | | || || || || || ||||| |||||| Sbjct 69743 TGTTCTACTTGTGCAGGTAAACTGTTAGAAGGACAAGTAGATCAATCTGATCAGTCATTT 69802 Query 50216 CTTGATGATGATCAACTTGAAGCTGGTTTTGTCTTGACATGTGTAGCTCGTCCTACTT 50273 || ||||||||||| | |||| || |||||| | |||||||| || |||||||| Sbjct 69803 CTAGATGATGATCAGGTAAAAGCAGGATTTGTCCTAACATGTGTTGCATATCCTACTT 69860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559324972637200