Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq43 203 5e-50 seq46 156 6e-36 >seq43 Length=27552 Score = 203 bits (224), Expect = 5e-50 Identities = 189/235 (80%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| || ||||||||||||| |||| ||||||| | Sbjct 11684 GTACAAAGGGCAGGGACGTATTCAACGCAAG-TTGATGACTCGCGTTTACAAGGAATT-C 11627 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| | || | || || || || ||||| | ||||||| | |||||||||||| Sbjct 11626 CTCGTTCATGAATA-CAGTTACAGAATTCAATCCCAAGCACGATGCACTTTCAAAGATTA 11568 Query 121 CCCGGA------CCTGTCGGCCAAGGT-GATAGACTCGTTGAATACATCAGTGTAGCGCG 173 ||| | | |||| | |||| || | |||| |||||| |||||||||||| || Sbjct 11567 CCCAAAATAACTCTTGTCAGAGTAGGTAGAAAAACTCTTTGAATGCATCAGTGTAGCCCG 11508 Query 174 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||| |||||| ||||| ||||||||||||||||||||||||||| ||||||| Sbjct 11507 CGTGCAGCCCAGGACATCAAAGGGCATCACAGACCTGTTATTGCCTACAACTTCC 11453 >seq46 Length=146086 Score = 156 bits (172), Expect = 6e-36 Identities = 186/242 (77%), Gaps = 19/242 (8%) Strand=Plus/Plus Query 4 CAAAGGGCAGGGACGTAGTCAACGCGAGCTTGA--TGACTCGCGC---TTACTAGGAATT 58 ||||||||||||||||| ||||||| || |||| |||| | ||| |||| ||||||| Sbjct 278 CAAAGGGCAGGGACGTATTCAACGCAAG-TTGAGCTGACACTCGCGTTTTACAAGGAATT 336 Query 59 TC-CTC-GTTGAAGACCAACAATTGCAATGA--TCTATCCCCATCACGATGAAATTTCAA 114 | ||| ||| | || | || ||| || || ||||| | ||||||| | |||||| Sbjct 337 CCTCTCAGTTCATGAATA-CAGTTGATCAGAATTCAATCCCAAGCACGATGCACTTTCAA 395 Query 115 AGATTACCCGGA------CCTGTCGGCCAAGGT-GATAGACTCGTTGAATACATCAGTGT 167 ||||||||| | | |||| | |||| || | |||| |||||| ||||||||| Sbjct 396 AGATTACCCAAAATAACTCTTGTCAGAGTAGGTAGAAAAACTCTTTGAATGCATCAGTGT 455 Query 168 AGCGCGCGTGCGGCCCAGAACATC-TAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 ||| ||||||| |||||| ||||| ||||||||||||||||||||||||||| ||||| Sbjct 456 AGCCCGCGTGCAGCCCAGGACATCAAAAGGGCATCACAGACCTGTTATTGCCTACAACTT 515 Query 227 CC 228 || Sbjct 516 CC 517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751999147655